miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 5' -57 NC_002512.2 + 128412 0.75 0.529732
Target:  5'- cCCGGuGGCGGGGUCGCCggagCCCUCcucGCGg -3'
miRNA:   3'- -GGCC-UCGUUCCAGUGG----GGGAGu--UGCa -5'
9370 5' -57 NC_002512.2 + 226483 0.72 0.67575
Target:  5'- gCCGGGGCccGGG-CGCuCCCCUCGccGCGg -3'
miRNA:   3'- -GGCCUCGu-UCCaGUG-GGGGAGU--UGCa -5'
9370 5' -57 NC_002512.2 + 94669 0.71 0.723944
Target:  5'- cCCGGGGCcGGGggGCCCCC-CGGCc- -3'
miRNA:   3'- -GGCCUCGuUCCagUGGGGGaGUUGca -5'
9370 5' -57 NC_002512.2 + 157071 0.71 0.723944
Target:  5'- cCCGGGGUccGGGGUCGCCggcgCCCaCGGCGg -3'
miRNA:   3'- -GGCCUCG--UUCCAGUGG----GGGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 140166 0.71 0.723944
Target:  5'- uCCGGuccCAAGGUCACCCgCCacccguUCGGCGa -3'
miRNA:   3'- -GGCCuc-GUUCCAGUGGG-GG------AGUUGCa -5'
9370 5' -57 NC_002512.2 + 88333 0.71 0.732455
Target:  5'- gCCauGAGCGAGGUCACCCCgUaguccacCAugGUg -3'
miRNA:   3'- -GGc-CUCGUUCCAGUGGGGgA-------GUugCA- -5'
9370 5' -57 NC_002512.2 + 157040 0.71 0.742769
Target:  5'- cCCGGAGCGAGG--ACCCCggCAagGCGg -3'
miRNA:   3'- -GGCCUCGUUCCagUGGGGgaGU--UGCa -5'
9370 5' -57 NC_002512.2 + 159060 0.7 0.757575
Target:  5'- cCCGGGGCGAGGcggacgacgCGCCCCUcccccaaccugcgCAACGg -3'
miRNA:   3'- -GGCCUCGUUCCa--------GUGGGGGa------------GUUGCa -5'
9370 5' -57 NC_002512.2 + 111809 0.7 0.770317
Target:  5'- gCCGGcGCcGGaGcCGCCCCCUCcGCGg -3'
miRNA:   3'- -GGCCuCGuUC-CaGUGGGGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 146179 0.7 0.770317
Target:  5'- gCCGcGcGGCAcGGUCGCCCUgggCUCGACGa -3'
miRNA:   3'- -GGC-C-UCGUuCCAGUGGGG---GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 198109 0.7 0.779284
Target:  5'- gCC-GAGUAGGGUUugGCCCCCUUGAgGUu -3'
miRNA:   3'- -GGcCUCGUUCCAG--UGGGGGAGUUgCA- -5'
9370 5' -57 NC_002512.2 + 150681 0.7 0.791631
Target:  5'- gCGGGcGCGGcGGUCGCCCCgacggaccguuggcuCUCGGCGg -3'
miRNA:   3'- gGCCU-CGUU-CCAGUGGGG---------------GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 204727 0.69 0.813856
Target:  5'- cCCGGGGCGGGGggccggACCCgggugCUCAGCGa -3'
miRNA:   3'- -GGCCUCGUUCCag----UGGGg----GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 98817 0.69 0.822138
Target:  5'- gCCGGAGCGAcGGaUCgGCCUCCggcgCGGCGc -3'
miRNA:   3'- -GGCCUCGUU-CC-AG-UGGGGGa---GUUGCa -5'
9370 5' -57 NC_002512.2 + 219427 0.69 0.822138
Target:  5'- cCCGGGGCGGcGGcgGCCUCCUCcGCGc -3'
miRNA:   3'- -GGCCUCGUU-CCagUGGGGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 95455 0.69 0.838217
Target:  5'- gCCaGGGCGAGGa-ACCCCCUgGGCa- -3'
miRNA:   3'- -GGcCUCGUUCCagUGGGGGAgUUGca -5'
9370 5' -57 NC_002512.2 + 213349 0.69 0.846
Target:  5'- uCCGGAGcCAGGGggaCGCCCgCgcuggCGGCGa -3'
miRNA:   3'- -GGCCUC-GUUCCa--GUGGGgGa----GUUGCa -5'
9370 5' -57 NC_002512.2 + 101295 0.68 0.851343
Target:  5'- cCCGGAcgucccggccucucGCAGGGUCgGCCCCCggaGGCc- -3'
miRNA:   3'- -GGCCU--------------CGUUCCAG-UGGGGGag-UUGca -5'
9370 5' -57 NC_002512.2 + 90598 0.68 0.852853
Target:  5'- cCCGGGGCGGGcGccccccuUCGCCCCCgcgcgccgggCGGCGc -3'
miRNA:   3'- -GGCCUCGUUC-C-------AGUGGGGGa---------GUUGCa -5'
9370 5' -57 NC_002512.2 + 165217 0.68 0.853605
Target:  5'- aCCGGcccGGCGAGG--ACCUCCgCGACGUg -3'
miRNA:   3'- -GGCC---UCGUUCCagUGGGGGaGUUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.