miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 5' -57 NC_002512.2 + 88333 0.71 0.732455
Target:  5'- gCCauGAGCGAGGUCACCCCgUaguccacCAugGUg -3'
miRNA:   3'- -GGc-CUCGUUCCAGUGGGGgA-------GUugCA- -5'
9370 5' -57 NC_002512.2 + 90598 0.68 0.852853
Target:  5'- cCCGGGGCGGGcGccccccuUCGCCCCCgcgcgccgggCGGCGc -3'
miRNA:   3'- -GGCCUCGUUC-C-------AGUGGGGGa---------GUUGCa -5'
9370 5' -57 NC_002512.2 + 94669 0.71 0.723944
Target:  5'- cCCGGGGCcGGGggGCCCCC-CGGCc- -3'
miRNA:   3'- -GGCCUCGuUCCagUGGGGGaGUUGca -5'
9370 5' -57 NC_002512.2 + 95455 0.69 0.838217
Target:  5'- gCCaGGGCGAGGa-ACCCCCUgGGCa- -3'
miRNA:   3'- -GGcCUCGUUCCagUGGGGGAgUUGca -5'
9370 5' -57 NC_002512.2 + 98127 0.67 0.91871
Target:  5'- gCCGGGGCGcuGGUCgucgcggccGCCCgCCcCGGCGg -3'
miRNA:   3'- -GGCCUCGUu-CCAG---------UGGG-GGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 98817 0.69 0.822138
Target:  5'- gCCGGAGCGAcGGaUCgGCCUCCggcgCGGCGc -3'
miRNA:   3'- -GGCCUCGUU-CC-AG-UGGGGGa---GUUGCa -5'
9370 5' -57 NC_002512.2 + 101295 0.68 0.851343
Target:  5'- cCCGGAcgucccggccucucGCAGGGUCgGCCCCCggaGGCc- -3'
miRNA:   3'- -GGCCU--------------CGUUCCAG-UGGGGGag-UUGca -5'
9370 5' -57 NC_002512.2 + 103621 0.68 0.884798
Target:  5'- cCCGGuaccGCugGAGGUCggcuucggacacccgGCCCuCCUCGGCGg -3'
miRNA:   3'- -GGCCu---CG--UUCCAG---------------UGGG-GGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 103981 0.68 0.882121
Target:  5'- gCCGGAGCu--GUCGCgCaCCCUgGACGc -3'
miRNA:   3'- -GGCCUCGuucCAGUG-G-GGGAgUUGCa -5'
9370 5' -57 NC_002512.2 + 105705 0.68 0.88875
Target:  5'- cCCGGcggacgAGCAgccAGGUgCACuCCCgCUCGACGa -3'
miRNA:   3'- -GGCC------UCGU---UCCA-GUG-GGG-GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 106257 0.66 0.947448
Target:  5'- cCCGGgugagGGUGAGGUCccACCUCCg-GACGUg -3'
miRNA:   3'- -GGCC-----UCGUUCCAG--UGGGGGagUUGCA- -5'
9370 5' -57 NC_002512.2 + 108433 0.67 0.907373
Target:  5'- cCCGGGGCcgggggccggGGGGUCcCuCCCCgggCGGCGc -3'
miRNA:   3'- -GGCCUCG----------UUCCAGuG-GGGGa--GUUGCa -5'
9370 5' -57 NC_002512.2 + 111809 0.7 0.770317
Target:  5'- gCCGGcGCcGGaGcCGCCCCCUCcGCGg -3'
miRNA:   3'- -GGCCuCGuUC-CaGUGGGGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 123062 0.67 0.924049
Target:  5'- gCGGAagaggaggucGCGGcGGccUCGCCCCCUCccGACGUc -3'
miRNA:   3'- gGCCU----------CGUU-CC--AGUGGGGGAG--UUGCA- -5'
9370 5' -57 NC_002512.2 + 127566 0.66 0.943205
Target:  5'- aCCGGAGCcGGccCAgCCgCUCGGCGa -3'
miRNA:   3'- -GGCCUCGuUCcaGUgGGgGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 127762 0.66 0.943205
Target:  5'- aCGGc-CAGGGUC-CCCCUcCGACGg -3'
miRNA:   3'- gGCCucGUUCCAGuGGGGGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 128136 0.67 0.907373
Target:  5'- aCGGAGCGcccGGGcCACCaCCUC-GCGa -3'
miRNA:   3'- gGCCUCGU---UCCaGUGGgGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 128412 0.75 0.529732
Target:  5'- cCCGGuGGCGGGGUCGCCggagCCCUCcucGCGg -3'
miRNA:   3'- -GGCC-UCGUUCCAGUGG----GGGAGu--UGCa -5'
9370 5' -57 NC_002512.2 + 131914 0.67 0.907373
Target:  5'- cCCGGGGCGuaccGG-CGCCCCUgcugCAcgggaGCGUa -3'
miRNA:   3'- -GGCCUCGUu---CCaGUGGGGGa---GU-----UGCA- -5'
9370 5' -57 NC_002512.2 + 140166 0.71 0.723944
Target:  5'- uCCGGuccCAAGGUCACCCgCCacccguUCGGCGa -3'
miRNA:   3'- -GGCCuc-GUUCCAGUGGG-GG------AGUUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.