miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 5' -57 NC_002512.2 + 226483 0.72 0.67575
Target:  5'- gCCGGGGCccGGG-CGCuCCCCUCGccGCGg -3'
miRNA:   3'- -GGCCUCGu-UCCaGUG-GGGGAGU--UGCa -5'
9370 5' -57 NC_002512.2 + 220131 0.67 0.907373
Target:  5'- gCGGGGCGgcGGGUCcggcuccgccGCCCCCaagGGCGUc -3'
miRNA:   3'- gGCCUCGU--UCCAG----------UGGGGGag-UUGCA- -5'
9370 5' -57 NC_002512.2 + 219515 0.68 0.860291
Target:  5'- gCCGGcGUucGG-CACCCCCgucuucgUCGGCGUg -3'
miRNA:   3'- -GGCCuCGuuCCaGUGGGGG-------AGUUGCA- -5'
9370 5' -57 NC_002512.2 + 219427 0.69 0.822138
Target:  5'- cCCGGGGCGGcGGcgGCCUCCUCcGCGc -3'
miRNA:   3'- -GGCCUCGUU-CCagUGGGGGAGuUGCa -5'
9370 5' -57 NC_002512.2 + 216301 0.67 0.913151
Target:  5'- cCCGGGGacguGGGUCACCUgCaUCuGCGg -3'
miRNA:   3'- -GGCCUCgu--UCCAGUGGGgG-AGuUGCa -5'
9370 5' -57 NC_002512.2 + 215187 0.66 0.947448
Target:  5'- -gGGAGCGgacgcGGGUCuACCUCUUCGucgGCGg -3'
miRNA:   3'- ggCCUCGU-----UCCAG-UGGGGGAGU---UGCa -5'
9370 5' -57 NC_002512.2 + 213349 0.69 0.846
Target:  5'- uCCGGAGcCAGGGggaCGCCCgCgcuggCGGCGa -3'
miRNA:   3'- -GGCCUC-GUUCCa--GUGGGgGa----GUUGCa -5'
9370 5' -57 NC_002512.2 + 211886 0.66 0.947448
Target:  5'- cCUGGAGC-GGGUCACCUUC-CGgggcugccGCGUc -3'
miRNA:   3'- -GGCCUCGuUCCAGUGGGGGaGU--------UGCA- -5'
9370 5' -57 NC_002512.2 + 210677 0.67 0.924049
Target:  5'- cCUGGuccaagcgcaacGGCAAGGcgccgcgggagaUCACCCgcuuCCUCAGCGUc -3'
miRNA:   3'- -GGCC------------UCGUUCC------------AGUGGG----GGAGUUGCA- -5'
9370 5' -57 NC_002512.2 + 204727 0.69 0.813856
Target:  5'- cCCGGGGCGGGGggccggACCCgggugCUCAGCGa -3'
miRNA:   3'- -GGCCUCGUUCCag----UGGGg----GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 202087 0.67 0.895171
Target:  5'- aCGGGGCGccGGUCACCUCgUCcgaccGCGUc -3'
miRNA:   3'- gGCCUCGUu-CCAGUGGGGgAGu----UGCA- -5'
9370 5' -57 NC_002512.2 + 200096 0.66 0.934067
Target:  5'- cCCGucGCGGGGUCGCCgggguaCUUCAGCa- -3'
miRNA:   3'- -GGCcuCGUUCCAGUGGg-----GGAGUUGca -5'
9370 5' -57 NC_002512.2 + 198109 0.7 0.779284
Target:  5'- gCC-GAGUAGGGUUugGCCCCCUUGAgGUu -3'
miRNA:   3'- -GGcCUCGUUCCAG--UGGGGGAGUUgCA- -5'
9370 5' -57 NC_002512.2 + 197660 0.67 0.907373
Target:  5'- uCUGGcccGaCGAGGUggaCGCCCuCCUCAACGg -3'
miRNA:   3'- -GGCCu--C-GUUCCA---GUGGG-GGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 191814 0.67 0.918164
Target:  5'- aCCGGGcacugacgcgcGCGGGGUCcuugcgcccucccACCCCUcCGGCGUc -3'
miRNA:   3'- -GGCCU-----------CGUUCCAG-------------UGGGGGaGUUGCA- -5'
9370 5' -57 NC_002512.2 + 191350 0.67 0.895171
Target:  5'- aCGGGGguAGGUCGCCgcgcgaCCUUGGCu- -3'
miRNA:   3'- gGCCUCguUCCAGUGGg-----GGAGUUGca -5'
9370 5' -57 NC_002512.2 + 190947 0.66 0.938745
Target:  5'- cCCGGGcGCAcgcGGG-CGCCCgCCgCGGCGg -3'
miRNA:   3'- -GGCCU-CGU---UCCaGUGGG-GGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 189186 0.67 0.901379
Target:  5'- gCCGGcaAGCAcccAGGUCGCCgCgggcggcaugCUCGACGUc -3'
miRNA:   3'- -GGCC--UCGU---UCCAGUGGgG----------GAGUUGCA- -5'
9370 5' -57 NC_002512.2 + 187125 0.66 0.947448
Target:  5'- aCCaGGGGCAGGGgCugCCCCUg----- -3'
miRNA:   3'- -GG-CCUCGUUCCaGugGGGGAguugca -5'
9370 5' -57 NC_002512.2 + 186237 0.68 0.868254
Target:  5'- aCCGaGGGCGAGGUC-CCggUCCUCGgucACGa -3'
miRNA:   3'- -GGC-CUCGUUCCAGuGG--GGGAGU---UGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.