miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9370 5' -57 NC_002512.2 + 144570 0.68 0.856595
Target:  5'- aCCGGcgaccuacgucgagcGGCAGGcGUCgAUCCCCUCGcACGa -3'
miRNA:   3'- -GGCC---------------UCGUUC-CAG-UGGGGGAGU-UGCa -5'
9370 5' -57 NC_002512.2 + 146179 0.7 0.770317
Target:  5'- gCCGcGcGGCAcGGUCGCCCUgggCUCGACGa -3'
miRNA:   3'- -GGC-C-UCGUuCCAGUGGGG---GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 147444 0.67 0.901379
Target:  5'- uCgGGAGCGGGaccgaCGCCCCCUCGuccccuccgccGCGg -3'
miRNA:   3'- -GgCCUCGUUCca---GUGGGGGAGU-----------UGCa -5'
9370 5' -57 NC_002512.2 + 150382 0.67 0.924049
Target:  5'- cUCGGAGUGAGaggcGUC-CCCCCUCccCGa -3'
miRNA:   3'- -GGCCUCGUUC----CAGuGGGGGAGuuGCa -5'
9370 5' -57 NC_002512.2 + 150681 0.7 0.791631
Target:  5'- gCGGGcGCGGcGGUCGCCCCgacggaccguuggcuCUCGGCGg -3'
miRNA:   3'- gGCCU-CGUU-CCAGUGGGG---------------GAGUUGCa -5'
9370 5' -57 NC_002512.2 + 156932 0.67 0.901379
Target:  5'- -aGGAGCccacGGUCGCCaCCCUgGugGc -3'
miRNA:   3'- ggCCUCGuu--CCAGUGG-GGGAgUugCa -5'
9370 5' -57 NC_002512.2 + 157040 0.71 0.742769
Target:  5'- cCCGGAGCGAGG--ACCCCggCAagGCGg -3'
miRNA:   3'- -GGCCUCGUUCCagUGGGGgaGU--UGCa -5'
9370 5' -57 NC_002512.2 + 157071 0.71 0.723944
Target:  5'- cCCGGGGUccGGGGUCGCCggcgCCCaCGGCGg -3'
miRNA:   3'- -GGCCUCG--UUCCAGUGG----GGGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 159060 0.7 0.757575
Target:  5'- cCCGGGGCGAGGcggacgacgCGCCCCUcccccaaccugcgCAACGg -3'
miRNA:   3'- -GGCCUCGUUCCa--------GUGGGGGa------------GUUGCa -5'
9370 5' -57 NC_002512.2 + 165217 0.68 0.853605
Target:  5'- aCCGGcccGGCGAGG--ACCUCCgCGACGUg -3'
miRNA:   3'- -GGCC---UCGUUCCagUGGGGGaGUUGCA- -5'
9370 5' -57 NC_002512.2 + 186237 0.68 0.868254
Target:  5'- aCCGaGGGCGAGGUC-CCggUCCUCGgucACGa -3'
miRNA:   3'- -GGC-CUCGUUCCAGuGG--GGGAGU---UGCa -5'
9370 5' -57 NC_002512.2 + 187125 0.66 0.947448
Target:  5'- aCCaGGGGCAGGGgCugCCCCUg----- -3'
miRNA:   3'- -GG-CCUCGUUCCaGugGGGGAguugca -5'
9370 5' -57 NC_002512.2 + 189186 0.67 0.901379
Target:  5'- gCCGGcaAGCAcccAGGUCGCCgCgggcggcaugCUCGACGUc -3'
miRNA:   3'- -GGCC--UCGU---UCCAGUGGgG----------GAGUUGCA- -5'
9370 5' -57 NC_002512.2 + 190947 0.66 0.938745
Target:  5'- cCCGGGcGCAcgcGGG-CGCCCgCCgCGGCGg -3'
miRNA:   3'- -GGCCU-CGU---UCCaGUGGG-GGaGUUGCa -5'
9370 5' -57 NC_002512.2 + 191350 0.67 0.895171
Target:  5'- aCGGGGguAGGUCGCCgcgcgaCCUUGGCu- -3'
miRNA:   3'- gGCCUCguUCCAGUGGg-----GGAGUUGca -5'
9370 5' -57 NC_002512.2 + 191814 0.67 0.918164
Target:  5'- aCCGGGcacugacgcgcGCGGGGUCcuugcgcccucccACCCCUcCGGCGUc -3'
miRNA:   3'- -GGCCU-----------CGUUCCAG-------------UGGGGGaGUUGCA- -5'
9370 5' -57 NC_002512.2 + 197660 0.67 0.907373
Target:  5'- uCUGGcccGaCGAGGUggaCGCCCuCCUCAACGg -3'
miRNA:   3'- -GGCCu--C-GUUCCA---GUGGG-GGAGUUGCa -5'
9370 5' -57 NC_002512.2 + 198109 0.7 0.779284
Target:  5'- gCC-GAGUAGGGUUugGCCCCCUUGAgGUu -3'
miRNA:   3'- -GGcCUCGUUCCAG--UGGGGGAGUUgCA- -5'
9370 5' -57 NC_002512.2 + 200096 0.66 0.934067
Target:  5'- cCCGucGCGGGGUCGCCgggguaCUUCAGCa- -3'
miRNA:   3'- -GGCcuCGUUCCAGUGGg-----GGAGUUGca -5'
9370 5' -57 NC_002512.2 + 202087 0.67 0.895171
Target:  5'- aCGGGGCGccGGUCACCUCgUCcgaccGCGUc -3'
miRNA:   3'- gGCCUCGUu-CCAGUGGGGgAGu----UGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.