miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 3' -53.2 NC_002512.2 + 208141 0.76 0.72768
Target:  5'- -aGUCCGCaGAUCGGaGcgGUCCGcGCg -3'
miRNA:   3'- ggCAGGCGcCUAGCCaUuaUAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 108757 0.75 0.774309
Target:  5'- -aGUgCGCGGcgCGGgcg-AUCCGGCu -3'
miRNA:   3'- ggCAgGCGCCuaGCCauuaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 150506 0.74 0.78152
Target:  5'- uCCGcCCGCGGGUCGGggugcaguUCCacgcGGCg -3'
miRNA:   3'- -GGCaGGCGCCUAGCCauuau---AGG----CCG- -5'
9372 3' -53.2 NC_002512.2 + 220123 0.74 0.783311
Target:  5'- gCCGcCaCGCGGggCGGcgg-GUCCGGCu -3'
miRNA:   3'- -GGCaG-GCGCCuaGCCauuaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 87781 0.74 0.800922
Target:  5'- gCCG-CCGaCGGGUCGGUAccggGUCCGcGUu -3'
miRNA:   3'- -GGCaGGC-GCCUAGCCAUua--UAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 205653 0.74 0.826243
Target:  5'- gCCGUCgGCGGGcccgacgccUCGGacagcUCCGGCg -3'
miRNA:   3'- -GGCAGgCGCCU---------AGCCauuauAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 132872 0.73 0.840732
Target:  5'- gCCGUCCGCGGAggaaaucgacgaCGGcgucc-CCGGCg -3'
miRNA:   3'- -GGCAGGCGCCUa-----------GCCauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 154684 0.73 0.842307
Target:  5'- aCCGUCCGCuccGAgCGGcc--GUCCGGCg -3'
miRNA:   3'- -GGCAGGCGc--CUaGCCauuaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 219309 0.73 0.849305
Target:  5'- gUCGUCCGCGGccacggggagagcGUCGGc-GUGgcccgCCGGCu -3'
miRNA:   3'- -GGCAGGCGCC-------------UAGCCauUAUa----GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 101220 0.73 0.850073
Target:  5'- cCCGUCCGcCGGGUucCGGcg----CCGGCa -3'
miRNA:   3'- -GGCAGGC-GCCUA--GCCauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 3639 0.73 0.864312
Target:  5'- uCUGUUCGCGGccgCGGUggcGAUAagaucgcUCCGGCu -3'
miRNA:   3'- -GGCAGGCGCCua-GCCA---UUAU-------AGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 199218 0.73 0.865042
Target:  5'- uCCGaCCGCGccgccCGGUAG-AUCCGGCg -3'
miRNA:   3'- -GGCaGGCGCcua--GCCAUUaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 222586 0.72 0.892576
Target:  5'- gCCGU-CGCGGAggaGGcc-UGUCCGGCc -3'
miRNA:   3'- -GGCAgGCGCCUag-CCauuAUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 37497 0.71 0.905072
Target:  5'- uUGUCCgcaucggauuGCGGAUCGGUuagagCUGGCu -3'
miRNA:   3'- gGCAGG----------CGCCUAGCCAuuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 100893 0.71 0.92216
Target:  5'- gCCGUCgGCGaGUcCGGUGAaggcCCGGCg -3'
miRNA:   3'- -GGCAGgCGCcUA-GCCAUUaua-GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 214948 0.71 0.932431
Target:  5'- cCCGUggCCGCGGAcgcaCGGg---GUCCGGa -3'
miRNA:   3'- -GGCA--GGCGCCUa---GCCauuaUAGGCCg -5'
9372 3' -53.2 NC_002512.2 + 155882 0.7 0.93723
Target:  5'- uUCGUCCccgacgGCGGGcgCGGggacgaGUCCGGCg -3'
miRNA:   3'- -GGCAGG------CGCCUa-GCCauua--UAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 141983 0.7 0.93723
Target:  5'- uCgGUCCGCaGAUCGGUcaacgaCCGGUu -3'
miRNA:   3'- -GgCAGGCGcCUAGCCAuuaua-GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 78005 0.7 0.941358
Target:  5'- aCGaUCCGCGGAUCG-------CCGGCg -3'
miRNA:   3'- gGC-AGGCGCCUAGCcauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 195050 0.7 0.941806
Target:  5'- gCCGcggcCCGCGGG-CGGgagGGUcGUCCGGUc -3'
miRNA:   3'- -GGCa---GGCGCCUaGCCa--UUA-UAGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.