miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 3' -53.2 NC_002512.2 + 3639 0.73 0.864312
Target:  5'- uCUGUUCGCGGccgCGGUggcGAUAagaucgcUCCGGCu -3'
miRNA:   3'- -GGCAGGCGCCua-GCCA---UUAU-------AGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 33709 0.68 0.983861
Target:  5'- cCCGUCUGCGGAacagCGucuugcggAUCCGGa -3'
miRNA:   3'- -GGCAGGCGCCUa---GCcauua---UAGGCCg -5'
9372 3' -53.2 NC_002512.2 + 36501 0.66 0.993336
Target:  5'- aCG-CUGCGGc-CGGUuauGUGUCCGuGCu -3'
miRNA:   3'- gGCaGGCGCCuaGCCAu--UAUAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 37497 0.71 0.905072
Target:  5'- uUGUCCgcaucggauuGCGGAUCGGUuagagCUGGCu -3'
miRNA:   3'- gGCAGG----------CGCCUAGCCAuuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 40571 0.67 0.98746
Target:  5'- gCGUCCGCGaaccgCGGUGAagaagauccUGUCCGcuuGCg -3'
miRNA:   3'- gGCAGGCGCcua--GCCAUU---------AUAGGC---CG- -5'
9372 3' -53.2 NC_002512.2 + 78005 0.7 0.941358
Target:  5'- aCGaUCCGCGGAUCG-------CCGGCg -3'
miRNA:   3'- gGC-AGGCGCCUAGCcauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 87781 0.74 0.800922
Target:  5'- gCCG-CCGaCGGGUCGGUAccggGUCCGcGUu -3'
miRNA:   3'- -GGCaGGC-GCCUAGCCAUua--UAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 88988 0.66 0.995632
Target:  5'- cCCGUCgucgacccggagCGCGGGgacgUCGGgcAgcgcgAUCCGaGCg -3'
miRNA:   3'- -GGCAG------------GCGCCU----AGCCauUa----UAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 90491 0.67 0.986857
Target:  5'- gCGUCCucgacgGGAUCGGggccgaggCCGGCg -3'
miRNA:   3'- gGCAGGcg----CCUAGCCauuaua--GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 90644 0.68 0.982375
Target:  5'- cCCGgcgCCGCGGccgCGGUcucggagUCGGCg -3'
miRNA:   3'- -GGCa--GGCGCCua-GCCAuuaua--GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 93782 0.66 0.995632
Target:  5'- -gGUCgggaGCGGAUCGGgugacgGGcGUCCGaGCc -3'
miRNA:   3'- ggCAGg---CGCCUAGCCa-----UUaUAGGC-CG- -5'
9372 3' -53.2 NC_002512.2 + 98817 0.69 0.967775
Target:  5'- gCCGgagCGaCGGAUCGGcc---UCCGGCg -3'
miRNA:   3'- -GGCag-GC-GCCUAGCCauuauAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 99715 0.66 0.994952
Target:  5'- cUCGUCCGCGccgucgCGGg-----CCGGCc -3'
miRNA:   3'- -GGCAGGCGCcua---GCCauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 100893 0.71 0.92216
Target:  5'- gCCGUCgGCGaGUcCGGUGAaggcCCGGCg -3'
miRNA:   3'- -GGCAGgCGCcUA-GCCAUUaua-GGCCG- -5'
9372 3' -53.2 NC_002512.2 + 101220 0.73 0.850073
Target:  5'- cCCGUCCGcCGGGUucCGGcg----CCGGCa -3'
miRNA:   3'- -GGCAGGC-GCCUA--GCCauuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 102955 0.66 0.992386
Target:  5'- -aGUCCGCGGAgaacucgUGGUc----CCGGUa -3'
miRNA:   3'- ggCAGGCGCCUa------GCCAuuauaGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 107215 0.69 0.957912
Target:  5'- gCCGcggCCGgGGAgccgCGGUcaccgucGUCCGGCu -3'
miRNA:   3'- -GGCa--GGCgCCUa---GCCAuua----UAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 108757 0.75 0.774309
Target:  5'- -aGUgCGCGGcgCGGgcg-AUCCGGCu -3'
miRNA:   3'- ggCAgGCGCCuaGCCauuaUAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 111702 0.69 0.970663
Target:  5'- cUCGgggUCGCGGAUgacgaCGG-AGUcUCCGGCg -3'
miRNA:   3'- -GGCa--GGCGCCUA-----GCCaUUAuAGGCCG- -5'
9372 3' -53.2 NC_002512.2 + 111790 0.69 0.967775
Target:  5'- gCCgGUCCGCGcGGUCGccg----CCGGCg -3'
miRNA:   3'- -GG-CAGGCGC-CUAGCcauuauaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.