Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9372 | 5' | -59 | NC_002512.2 | + | 158688 | 0.68 | 0.792752 |
Target: 5'- uGGC-CGGcCGGGACGGGgaggugCCCGa -3' miRNA: 3'- cCCGuGCCaGUCCUGCCUaga---GGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 98180 | 0.68 | 0.79956 |
Target: 5'- cGGGCGCGGcgaccguccgaGGGAUGGcgUUCUCGg -3' miRNA: 3'- -CCCGUGCCag---------UCCUGCCuaGAGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 205227 | 0.68 | 0.801248 |
Target: 5'- cGGG-ACGGagaUCGGGACGGAcgacgucgUCUuCCCGc -3' miRNA: 3'- -CCCgUGCC---AGUCCUGCCU--------AGA-GGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 158984 | 0.68 | 0.801248 |
Target: 5'- cGGcCACGG-CGGGGCGGAggcggCggcCCCGg -3' miRNA: 3'- cCC-GUGCCaGUCCUGCCUa----Ga--GGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 35113 | 0.68 | 0.809609 |
Target: 5'- cGGcGCACcGUCGGGAUGGuAUCUCugucuCCGg -3' miRNA: 3'- -CC-CGUGcCAGUCCUGCC-UAGAG-----GGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 123158 | 0.68 | 0.817011 |
Target: 5'- gGGGCcgaggagGCGGaCAGGAgCGcGGUCaUCCCGg -3' miRNA: 3'- -CCCG-------UGCCaGUCCU-GC-CUAG-AGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 207758 | 0.68 | 0.821071 |
Target: 5'- gGGGUGgagccgccgccguggUGGUugCGGGACGGcgucGUCUCCCGg -3' miRNA: 3'- -CCCGU---------------GCCA--GUCCUGCC----UAGAGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 204900 | 0.67 | 0.823489 |
Target: 5'- cGGCgaGCGGUCcuggucgggugacgGGGACGGGUucgaCUCCCu- -3' miRNA: 3'- cCCG--UGCCAG--------------UCCUGCCUA----GAGGGca -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 209563 | 0.67 | 0.833803 |
Target: 5'- cGGaGCGCGGUCucGACGG--CUCCuCGUc -3' miRNA: 3'- -CC-CGUGCCAGucCUGCCuaGAGG-GCA- -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 127663 | 0.67 | 0.840782 |
Target: 5'- cGGC-CGGUCgAGGGCcgcuccggccgcgGcGAUCUCCCGc -3' miRNA: 3'- cCCGuGCCAG-UCCUG-------------C-CUAGAGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 153185 | 0.67 | 0.841549 |
Target: 5'- cGGGCAgCGGUgGGGAgGGcggCaCCCGg -3' miRNA: 3'- -CCCGU-GCCAgUCCUgCCua-GaGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 145514 | 0.67 | 0.849127 |
Target: 5'- gGGGCugcuccggcucuGCGcGUCGGGcCGGAgcaUCCCGc -3' miRNA: 3'- -CCCG------------UGC-CAGUCCuGCCUag-AGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 150682 | 0.67 | 0.855796 |
Target: 5'- cGGGCGCGG-CGGucgccccGACGGAccguuggCUCUCGg -3' miRNA: 3'- -CCCGUGCCaGUC-------CUGCCUa------GAGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 130349 | 0.67 | 0.86375 |
Target: 5'- uGGGCACGaccCcGGGCGGAccgCUCaCCGUc -3' miRNA: 3'- -CCCGUGCca-GuCCUGCCUa--GAG-GGCA- -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 173347 | 0.67 | 0.86375 |
Target: 5'- cGGCACGcGcCuGGACGuccugCUCCCGUg -3' miRNA: 3'- cCCGUGC-CaGuCCUGCcua--GAGGGCA- -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 159387 | 0.67 | 0.86375 |
Target: 5'- cGGGUcccGCGGcgUCGGGGCGGAaggUCCGg -3' miRNA: 3'- -CCCG---UGCC--AGUCCUGCCUagaGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 176431 | 0.66 | 0.874916 |
Target: 5'- aGGGUggccaucugcgccGCGGUCGGGGuguCGGGuuccgcggcucucuUCUCCUGg -3' miRNA: 3'- -CCCG-------------UGCCAGUCCU---GCCU--------------AGAGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 113268 | 0.66 | 0.890731 |
Target: 5'- gGGGgGCGGccggCGGGgcagccgcgGCGGGcCUCCCGc -3' miRNA: 3'- -CCCgUGCCa---GUCC---------UGCCUaGAGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 160750 | 0.66 | 0.890731 |
Target: 5'- cGGCGcCGGcccCGGGcACGGAggUCCCGg -3' miRNA: 3'- cCCGU-GCCa--GUCC-UGCCUagAGGGCa -5' |
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9372 | 5' | -59 | NC_002512.2 | + | 153294 | 0.66 | 0.896364 |
Target: 5'- -cGCugGGUCGGucCGGGUCggccgguUCCCGc -3' miRNA: 3'- ccCGugCCAGUCcuGCCUAG-------AGGGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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