miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 5' -59 NC_002512.2 + 225752 0.77 0.323262
Target:  5'- gGGGCGCGGcCGGGACaugGGAUCcaucuguUCCCGa -3'
miRNA:   3'- -CCCGUGCCaGUCCUG---CCUAG-------AGGGCa -5'
9372 5' -59 NC_002512.2 + 223010 0.75 0.406999
Target:  5'- cGGCACGGcccaGGGACGGGUCgucgCCCa- -3'
miRNA:   3'- cCCGUGCCag--UCCUGCCUAGa---GGGca -5'
9372 5' -59 NC_002512.2 + 201865 0.74 0.492188
Target:  5'- gGGGCcuGCGGUCcgAGGACGGcggcggcuucuccGUCUCCCc- -3'
miRNA:   3'- -CCCG--UGCCAG--UCCUGCC-------------UAGAGGGca -5'
9372 5' -59 NC_002512.2 + 221397 0.73 0.511321
Target:  5'- gGGGCGCGGgCGGGgaggcgGCGGGUCUgUCCGa -3'
miRNA:   3'- -CCCGUGCCaGUCC------UGCCUAGA-GGGCa -5'
9372 5' -59 NC_002512.2 + 90450 0.71 0.615481
Target:  5'- aGGGCgGCGGcCGGGccagcuGCGGGUC-CCCGa -3'
miRNA:   3'- -CCCG-UGCCaGUCC------UGCCUAGaGGGCa -5'
9372 5' -59 NC_002512.2 + 179967 0.71 0.625132
Target:  5'- uGGGCcgugccguugaACGGUCGGGACaGcgCguggCCCGUg -3'
miRNA:   3'- -CCCG-----------UGCCAGUCCUGcCuaGa---GGGCA- -5'
9372 5' -59 NC_002512.2 + 183971 0.71 0.634789
Target:  5'- cGGGCGuCGucgccuGUCGGGGCGGAcagCUCCCc- -3'
miRNA:   3'- -CCCGU-GC------CAGUCCUGCCUa--GAGGGca -5'
9372 5' -59 NC_002512.2 + 190214 0.7 0.673328
Target:  5'- cGGCGCGGUCguccGGGACGGccacGUCUgCUGc -3'
miRNA:   3'- cCCGUGCCAG----UCCUGCC----UAGAgGGCa -5'
9372 5' -59 NC_002512.2 + 193900 0.7 0.682906
Target:  5'- cGGGUcgccGCGGUC-GG-CGGAUCgcgUCCCGg -3'
miRNA:   3'- -CCCG----UGCCAGuCCuGCCUAG---AGGGCa -5'
9372 5' -59 NC_002512.2 + 202131 0.7 0.699099
Target:  5'- uGGCGcCGGUCucggccgccgccgcGGGGCGGGUggucgUUCCCGUg -3'
miRNA:   3'- cCCGU-GCCAG--------------UCCUGCCUA-----GAGGGCA- -5'
9372 5' -59 NC_002512.2 + 219831 0.7 0.701943
Target:  5'- gGGGguCGGUCGGG--GGGUCcggCCCGg -3'
miRNA:   3'- -CCCguGCCAGUCCugCCUAGa--GGGCa -5'
9372 5' -59 NC_002512.2 + 227342 0.7 0.711386
Target:  5'- aGGGgACGGagagaCGGGACGGAggaggCCCGg -3'
miRNA:   3'- -CCCgUGCCa----GUCCUGCCUaga--GGGCa -5'
9372 5' -59 NC_002512.2 + 227633 0.7 0.72077
Target:  5'- cGGCGaGGUCAGGcgACGGAgcgCCCGg -3'
miRNA:   3'- cCCGUgCCAGUCC--UGCCUagaGGGCa -5'
9372 5' -59 NC_002512.2 + 143687 0.7 0.724505
Target:  5'- cGGGCGgGGugUCGGGcACGGAgggccgaccuccagCUCCCGc -3'
miRNA:   3'- -CCCGUgCC--AGUCC-UGCCUa-------------GAGGGCa -5'
9372 5' -59 NC_002512.2 + 202535 0.69 0.730086
Target:  5'- cGGGgGCGGacgaccCAGGgcucgcagucgGCGGAUCUCCUGc -3'
miRNA:   3'- -CCCgUGCCa-----GUCC-----------UGCCUAGAGGGCa -5'
9372 5' -59 NC_002512.2 + 117733 0.69 0.766518
Target:  5'- uGGGUGCgagGGUcCAGGACcuguuccaGAUCUCCCGa -3'
miRNA:   3'- -CCCGUG---CCA-GUCCUGc-------CUAGAGGGCa -5'
9372 5' -59 NC_002512.2 + 184583 0.68 0.775379
Target:  5'- cGGGC-CGG-CAGGGCGGcgGUCcgUCCGa -3'
miRNA:   3'- -CCCGuGCCaGUCCUGCC--UAGa-GGGCa -5'
9372 5' -59 NC_002512.2 + 217785 0.68 0.784126
Target:  5'- gGGGuCGCGGcCGGcuGGCGGAUCggcgucgccgUCCCGa -3'
miRNA:   3'- -CCC-GUGCCaGUC--CUGCCUAG----------AGGGCa -5'
9372 5' -59 NC_002512.2 + 149380 0.68 0.784126
Target:  5'- aGGGCGCGGggacgCAGGACuccggCUCCuCGa -3'
miRNA:   3'- -CCCGUGCCa----GUCCUGccua-GAGG-GCa -5'
9372 5' -59 NC_002512.2 + 114034 0.68 0.792752
Target:  5'- cGGGCGCGGUggacguagAGGGCGGg---CCCGg -3'
miRNA:   3'- -CCCGUGCCAg-------UCCUGCCuagaGGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.