miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 5' -59 NC_002512.2 + 35113 0.68 0.809609
Target:  5'- cGGcGCACcGUCGGGAUGGuAUCUCugucuCCGg -3'
miRNA:   3'- -CC-CGUGcCAGUCCUGCC-UAGAG-----GGCa -5'
9372 5' -59 NC_002512.2 + 90450 0.71 0.615481
Target:  5'- aGGGCgGCGGcCGGGccagcuGCGGGUC-CCCGa -3'
miRNA:   3'- -CCCG-UGCCaGUCC------UGCCUAGaGGGCa -5'
9372 5' -59 NC_002512.2 + 95267 0.66 0.903024
Target:  5'- aGGGCACGGaguagacCAGGACgcaGGGgaaCCCGg -3'
miRNA:   3'- -CCCGUGCCa------GUCCUG---CCUagaGGGCa -5'
9372 5' -59 NC_002512.2 + 98180 0.68 0.79956
Target:  5'- cGGGCGCGGcgaccguccgaGGGAUGGcgUUCUCGg -3'
miRNA:   3'- -CCCGUGCCag---------UCCUGCCuaGAGGGCa -5'
9372 5' -59 NC_002512.2 + 113268 0.66 0.890731
Target:  5'- gGGGgGCGGccggCGGGgcagccgcgGCGGGcCUCCCGc -3'
miRNA:   3'- -CCCgUGCCa---GUCC---------UGCCUaGAGGGCa -5'
9372 5' -59 NC_002512.2 + 114034 0.68 0.792752
Target:  5'- cGGGCGCGGUggacguagAGGGCGGg---CCCGg -3'
miRNA:   3'- -CCCGUGCCAg-------UCCUGCCuagaGGGCa -5'
9372 5' -59 NC_002512.2 + 117733 0.69 0.766518
Target:  5'- uGGGUGCgagGGUcCAGGACcuguuccaGAUCUCCCGa -3'
miRNA:   3'- -CCCGUG---CCA-GUCCUGc-------CUAGAGGGCa -5'
9372 5' -59 NC_002512.2 + 123158 0.68 0.817011
Target:  5'- gGGGCcgaggagGCGGaCAGGAgCGcGGUCaUCCCGg -3'
miRNA:   3'- -CCCG-------UGCCaGUCCU-GC-CUAG-AGGGCa -5'
9372 5' -59 NC_002512.2 + 127663 0.67 0.840782
Target:  5'- cGGC-CGGUCgAGGGCcgcuccggccgcgGcGAUCUCCCGc -3'
miRNA:   3'- cCCGuGCCAG-UCCUG-------------C-CUAGAGGGCa -5'
9372 5' -59 NC_002512.2 + 130349 0.67 0.86375
Target:  5'- uGGGCACGaccCcGGGCGGAccgCUCaCCGUc -3'
miRNA:   3'- -CCCGUGCca-GuCCUGCCUa--GAG-GGCA- -5'
9372 5' -59 NC_002512.2 + 143687 0.7 0.724505
Target:  5'- cGGGCGgGGugUCGGGcACGGAgggccgaccuccagCUCCCGc -3'
miRNA:   3'- -CCCGUgCC--AGUCC-UGCCUa-------------GAGGGCa -5'
9372 5' -59 NC_002512.2 + 145514 0.67 0.849127
Target:  5'- gGGGCugcuccggcucuGCGcGUCGGGcCGGAgcaUCCCGc -3'
miRNA:   3'- -CCCG------------UGC-CAGUCCuGCCUag-AGGGCa -5'
9372 5' -59 NC_002512.2 + 149380 0.68 0.784126
Target:  5'- aGGGCGCGGggacgCAGGACuccggCUCCuCGa -3'
miRNA:   3'- -CCCGUGCCa----GUCCUGccua-GAGG-GCa -5'
9372 5' -59 NC_002512.2 + 150682 0.67 0.855796
Target:  5'- cGGGCGCGG-CGGucgccccGACGGAccguuggCUCUCGg -3'
miRNA:   3'- -CCCGUGCCaGUC-------CUGCCUa------GAGGGCa -5'
9372 5' -59 NC_002512.2 + 153185 0.67 0.841549
Target:  5'- cGGGCAgCGGUgGGGAgGGcggCaCCCGg -3'
miRNA:   3'- -CCCGU-GCCAgUCCUgCCua-GaGGGCa -5'
9372 5' -59 NC_002512.2 + 153294 0.66 0.896364
Target:  5'- -cGCugGGUCGGucCGGGUCggccgguUCCCGc -3'
miRNA:   3'- ccCGugCCAGUCcuGCCUAG-------AGGGCa -5'
9372 5' -59 NC_002512.2 + 158688 0.68 0.792752
Target:  5'- uGGC-CGGcCGGGACGGGgaggugCCCGa -3'
miRNA:   3'- cCCGuGCCaGUCCUGCCUaga---GGGCa -5'
9372 5' -59 NC_002512.2 + 158984 0.68 0.801248
Target:  5'- cGGcCACGG-CGGGGCGGAggcggCggcCCCGg -3'
miRNA:   3'- cCC-GUGCCaGUCCUGCCUa----Ga--GGGCa -5'
9372 5' -59 NC_002512.2 + 159387 0.67 0.86375
Target:  5'- cGGGUcccGCGGcgUCGGGGCGGAaggUCCGg -3'
miRNA:   3'- -CCCG---UGCC--AGUCCUGCCUagaGGGCa -5'
9372 5' -59 NC_002512.2 + 160750 0.66 0.890731
Target:  5'- cGGCGcCGGcccCGGGcACGGAggUCCCGg -3'
miRNA:   3'- cCCGU-GCCa--GUCC-UGCCUagAGGGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.