miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9372 5' -59 NC_002512.2 + 227633 0.7 0.72077
Target:  5'- cGGCGaGGUCAGGcgACGGAgcgCCCGg -3'
miRNA:   3'- cCCGUgCCAGUCC--UGCCUagaGGGCa -5'
9372 5' -59 NC_002512.2 + 227342 0.7 0.711386
Target:  5'- aGGGgACGGagagaCGGGACGGAggaggCCCGg -3'
miRNA:   3'- -CCCgUGCCa----GUCCUGCCUaga--GGGCa -5'
9372 5' -59 NC_002512.2 + 225752 0.77 0.323262
Target:  5'- gGGGCGCGGcCGGGACaugGGAUCcaucuguUCCCGa -3'
miRNA:   3'- -CCCGUGCCaGUCCUG---CCUAG-------AGGGCa -5'
9372 5' -59 NC_002512.2 + 223010 0.75 0.406999
Target:  5'- cGGCACGGcccaGGGACGGGUCgucgCCCa- -3'
miRNA:   3'- cCCGUGCCag--UCCUGCCUAGa---GGGca -5'
9372 5' -59 NC_002512.2 + 221397 0.73 0.511321
Target:  5'- gGGGCGCGGgCGGGgaggcgGCGGGUCUgUCCGa -3'
miRNA:   3'- -CCCGUGCCaGUCC------UGCCUAGA-GGGCa -5'
9372 5' -59 NC_002512.2 + 219942 0.66 0.903024
Target:  5'- -cGCGCGGgggAGGGUGGAUCcCCCGg -3'
miRNA:   3'- ccCGUGCCag-UCCUGCCUAGaGGGCa -5'
9372 5' -59 NC_002512.2 + 219831 0.7 0.701943
Target:  5'- gGGGguCGGUCGGG--GGGUCcggCCCGg -3'
miRNA:   3'- -CCCguGCCAGUCCugCCUAGa--GGGCa -5'
9372 5' -59 NC_002512.2 + 217785 0.68 0.784126
Target:  5'- gGGGuCGCGGcCGGcuGGCGGAUCggcgucgccgUCCCGa -3'
miRNA:   3'- -CCC-GUGCCaGUC--CUGCCUAG----------AGGGCa -5'
9372 5' -59 NC_002512.2 + 209563 0.67 0.833803
Target:  5'- cGGaGCGCGGUCucGACGG--CUCCuCGUc -3'
miRNA:   3'- -CC-CGUGCCAGucCUGCCuaGAGG-GCA- -5'
9372 5' -59 NC_002512.2 + 207758 0.68 0.821071
Target:  5'- gGGGUGgagccgccgccguggUGGUugCGGGACGGcgucGUCUCCCGg -3'
miRNA:   3'- -CCCGU---------------GCCA--GUCCUGCC----UAGAGGGCa -5'
9372 5' -59 NC_002512.2 + 205227 0.68 0.801248
Target:  5'- cGGG-ACGGagaUCGGGACGGAcgacgucgUCUuCCCGc -3'
miRNA:   3'- -CCCgUGCC---AGUCCUGCCU--------AGA-GGGCa -5'
9372 5' -59 NC_002512.2 + 204900 0.67 0.823489
Target:  5'- cGGCgaGCGGUCcuggucgggugacgGGGACGGGUucgaCUCCCu- -3'
miRNA:   3'- cCCG--UGCCAG--------------UCCUGCCUA----GAGGGca -5'
9372 5' -59 NC_002512.2 + 202535 0.69 0.730086
Target:  5'- cGGGgGCGGacgaccCAGGgcucgcagucgGCGGAUCUCCUGc -3'
miRNA:   3'- -CCCgUGCCa-----GUCC-----------UGCCUAGAGGGCa -5'
9372 5' -59 NC_002512.2 + 202131 0.7 0.699099
Target:  5'- uGGCGcCGGUCucggccgccgccgcGGGGCGGGUggucgUUCCCGUg -3'
miRNA:   3'- cCCGU-GCCAG--------------UCCUGCCUA-----GAGGGCA- -5'
9372 5' -59 NC_002512.2 + 201865 0.74 0.492188
Target:  5'- gGGGCcuGCGGUCcgAGGACGGcggcggcuucuccGUCUCCCc- -3'
miRNA:   3'- -CCCG--UGCCAG--UCCUGCC-------------UAGAGGGca -5'
9372 5' -59 NC_002512.2 + 193900 0.7 0.682906
Target:  5'- cGGGUcgccGCGGUC-GG-CGGAUCgcgUCCCGg -3'
miRNA:   3'- -CCCG----UGCCAGuCCuGCCUAG---AGGGCa -5'
9372 5' -59 NC_002512.2 + 191528 0.66 0.896364
Target:  5'- aGGCcguGgGGUCGGGcgacccgGCGGAUC-CCCGc -3'
miRNA:   3'- cCCG---UgCCAGUCC-------UGCCUAGaGGGCa -5'
9372 5' -59 NC_002512.2 + 191042 0.66 0.89698
Target:  5'- gGGGCGCGGcgCAcguGGACcGGUCgcgCCUGg -3'
miRNA:   3'- -CCCGUGCCa-GU---CCUGcCUAGa--GGGCa -5'
9372 5' -59 NC_002512.2 + 190214 0.7 0.673328
Target:  5'- cGGCGCGGUCguccGGGACGGccacGUCUgCUGc -3'
miRNA:   3'- cCCGUGCCAG----UCCUGCC----UAGAgGGCa -5'
9372 5' -59 NC_002512.2 + 184583 0.68 0.775379
Target:  5'- cGGGC-CGG-CAGGGCGGcgGUCcgUCCGa -3'
miRNA:   3'- -CCCGuGCCaGUCCUGCC--UAGa-GGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.