miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 211338 0.8 0.495148
Target:  5'- gGCCCGGgCGCuGGGGGACGcgCGCGGc -3'
miRNA:   3'- aCGGGCCaGUG-UUUCUUGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 129211 0.78 0.592781
Target:  5'- cGCCgcUGGcCGCGGAGAacgaacgcGCGAUCGCGGg -3'
miRNA:   3'- aCGG--GCCaGUGUUUCU--------UGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 131959 0.76 0.71271
Target:  5'- aUGCCCGG-CggaucgcgguagGCGAAGAACGAggucgCGUGGg -3'
miRNA:   3'- -ACGGGCCaG------------UGUUUCUUGCUa----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 169147 0.76 0.702881
Target:  5'- cGCCCGGcCGCc----GCGGUCGCGGu -3'
miRNA:   3'- aCGGGCCaGUGuuucuUGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 128410 0.75 0.769985
Target:  5'- aGCCCGGUgGCGGGGucgcCGGagcccuccUCGCGGg -3'
miRNA:   3'- aCGGGCCAgUGUUUCuu--GCU--------AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 112362 0.74 0.78822
Target:  5'- aGCCCGGaCACcuuGGGcACGAUgGCGGu -3'
miRNA:   3'- aCGGGCCaGUGu--UUCuUGCUAgCGCC- -5'
9373 3' -52.9 NC_002512.2 + 133435 0.74 0.78822
Target:  5'- -aCCCGGaCGCGGacGGGAuCGAUCGCGGu -3'
miRNA:   3'- acGGGCCaGUGUU--UCUU-GCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 103676 0.74 0.805912
Target:  5'- cGCCuCGacGUCGCAGAGGGCGGcggaCGCGGc -3'
miRNA:   3'- aCGG-GC--CAGUGUUUCUUGCUa---GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 212600 0.74 0.779166
Target:  5'- aUGUCCGGagACGAGGAggacgACGAggaCGCGGa -3'
miRNA:   3'- -ACGGGCCagUGUUUCU-----UGCUa--GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 152759 0.74 0.779166
Target:  5'- aGCCCGGUCGaAAAGGAuCGGacccCGCGGu -3'
miRNA:   3'- aCGGGCCAGUgUUUCUU-GCUa---GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 107721 0.73 0.839412
Target:  5'- gGCgCaGGUCGCAGAGGugGGU-GCGGu -3'
miRNA:   3'- aCGgG-CCAGUGUUUCUugCUAgCGCC- -5'
9373 3' -52.9 NC_002512.2 + 131624 0.73 0.831292
Target:  5'- cGCCCGGcCACGAAG-ACGcUCuCGGa -3'
miRNA:   3'- aCGGGCCaGUGUUUCuUGCuAGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 5080 0.72 0.897312
Target:  5'- cGUUCGGgacucCACAGAGAccACGAaCGCGGu -3'
miRNA:   3'- aCGGGCCa----GUGUUUCU--UGCUaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 188915 0.72 0.890811
Target:  5'- cGCgCGGUCGgAGAGuccCGGUgGCGGg -3'
miRNA:   3'- aCGgGCCAGUgUUUCuu-GCUAgCGCC- -5'
9373 3' -52.9 NC_002512.2 + 130503 0.72 0.862653
Target:  5'- aGUCCGGaccccgacgcUgGCGGAGAGCucgGGUCGCGGg -3'
miRNA:   3'- aCGGGCC----------AgUGUUUCUUG---CUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 109940 0.72 0.870007
Target:  5'- aGCUCGGagACG----GCGAUCGCGGa -3'
miRNA:   3'- aCGGGCCagUGUuucuUGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 196161 0.72 0.877154
Target:  5'- cGCuCCGGUCgACGAGGGGCGAgccCGaGGg -3'
miRNA:   3'- aCG-GGCCAG-UGUUUCUUGCUa--GCgCC- -5'
9373 3' -52.9 NC_002512.2 + 128028 0.72 0.888818
Target:  5'- cGcCCCGG-CGuCGAAGAgcugcacggccccgACGGUCGCGGc -3'
miRNA:   3'- aC-GGGCCaGU-GUUUCU--------------UGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 111529 0.72 0.877154
Target:  5'- cGCCCuGUCACGuAGAGCGAgaucUCcCGGg -3'
miRNA:   3'- aCGGGcCAGUGUuUCUUGCU----AGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 112933 0.71 0.915468
Target:  5'- gGCCCGGUgGCGc---GCGAgccCGCGGa -3'
miRNA:   3'- aCGGGCCAgUGUuucuUGCUa--GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.