miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 203 0.69 0.967613
Target:  5'- gGCCCGG--GCGGAGAGgGAgCGgGGa -3'
miRNA:   3'- aCGGGCCagUGUUUCUUgCUaGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 3688 0.69 0.961128
Target:  5'- gGCCCGGcCGCGcgcuAACGG-CGCGGc -3'
miRNA:   3'- aCGGGCCaGUGUuuc-UUGCUaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 5080 0.72 0.897312
Target:  5'- cGUUCGGgacucCACAGAGAccACGAaCGCGGu -3'
miRNA:   3'- aCGGGCCa----GUGUUUCU--UGCUaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 8862 0.67 0.98429
Target:  5'- gUGCaccguCGGUCACGAAGAagACGAggCuCGGg -3'
miRNA:   3'- -ACGg----GCCAGUGUUUCU--UGCUa-GcGCC- -5'
9373 3' -52.9 NC_002512.2 + 11733 0.66 0.992508
Target:  5'- gGuCCCGGUCuc-GAGGACGuAUC-CGGa -3'
miRNA:   3'- aC-GGGCCAGuguUUCUUGC-UAGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 35785 0.68 0.982428
Target:  5'- gGaCCCGGaucgUCACcauucuuGGAgGAUCGCGGa -3'
miRNA:   3'- aC-GGGCC----AGUGuuu----CUUgCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 35916 0.67 0.988147
Target:  5'- cGCCCGGUUGCGccauGucggaguggcggcauGGAACGAUCGg-- -3'
miRNA:   3'- aCGGGCCAGUGU----U---------------UCUUGCUAGCgcc -5'
9373 3' -52.9 NC_002512.2 + 36999 0.69 0.964474
Target:  5'- gGCauCCGGUCGCGAAGuguUGGUCGUa- -3'
miRNA:   3'- aCG--GGCCAGUGUUUCuu-GCUAGCGcc -5'
9373 3' -52.9 NC_002512.2 + 37737 0.67 0.98429
Target:  5'- cGUCaaggCGGUCACGAcgacggccgcAGAACGGagaCGCGGa -3'
miRNA:   3'- aCGG----GCCAGUGUU----------UCUUGCUa--GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 49626 0.66 0.994309
Target:  5'- aGCauucaCaGUCACAGGGAG-GAUCGuCGGg -3'
miRNA:   3'- aCGg----GcCAGUGUUUCUUgCUAGC-GCC- -5'
9373 3' -52.9 NC_002512.2 + 72385 0.71 0.903591
Target:  5'- cGUCUGGUCGCGGuGGACGcugaucguucUCGCGGu -3'
miRNA:   3'- aCGGGCCAGUGUUuCUUGCu---------AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 74808 0.67 0.987561
Target:  5'- cGCCCGGgCACccGGcAGCGGcgGCGGa -3'
miRNA:   3'- aCGGGCCaGUGuuUC-UUGCUagCGCC- -5'
9373 3' -52.9 NC_002512.2 + 75546 0.67 0.987561
Target:  5'- cGCC--GUgGCGGAGGACGAcgaCGCGGa -3'
miRNA:   3'- aCGGgcCAgUGUUUCUUGCUa--GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 75778 0.68 0.973291
Target:  5'- aGCCCGGgaggACGGggcAGAGCGGgggaGCGGu -3'
miRNA:   3'- aCGGGCCag--UGUU---UCUUGCUag--CGCC- -5'
9373 3' -52.9 NC_002512.2 + 77580 0.7 0.931561
Target:  5'- cGUCCGaGcCACGccGAGCGGucccUCGCGGa -3'
miRNA:   3'- aCGGGC-CaGUGUuuCUUGCU----AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 90655 0.71 0.903591
Target:  5'- gGCCgCGGUCuCGGAGucgGCGGcCGCGGc -3'
miRNA:   3'- aCGG-GCCAGuGUUUCu--UGCUaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 91068 0.71 0.921063
Target:  5'- cGCCUggaGGUCGCAccGGGAGCGGuUCGUGc -3'
miRNA:   3'- aCGGG---CCAGUGU--UUCUUGCU-AGCGCc -5'
9373 3' -52.9 NC_002512.2 + 91879 0.69 0.964474
Target:  5'- cGUCCGG-CGCGGGcGGCGG-CGCGGc -3'
miRNA:   3'- aCGGGCCaGUGUUUcUUGCUaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 91918 0.67 0.987561
Target:  5'- gGCCCGG-CACGcAGGACaucCGCGa -3'
miRNA:   3'- aCGGGCCaGUGUuUCUUGcuaGCGCc -5'
9373 3' -52.9 NC_002512.2 + 92610 0.68 0.975843
Target:  5'- aGgCCGGUCGCGAcgacGGACGGaCgGCGGc -3'
miRNA:   3'- aCgGGCCAGUGUUu---CUUGCUaG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.