miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 94747 0.69 0.961128
Target:  5'- cGCCCGGUCGCAGgcgucGGuGACGAcCuuGGa -3'
miRNA:   3'- aCGGGCCAGUGUU-----UC-UUGCUaGcgCC- -5'
9373 3' -52.9 NC_002512.2 + 98154 0.71 0.921063
Target:  5'- cGCCCcggcGGUCGCcgcggucuGGACGggCGCGGc -3'
miRNA:   3'- aCGGG----CCAGUGuuu-----CUUGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 99110 0.66 0.995069
Target:  5'- aGCCCGGgcCGCuccAAGA--GAUCGCGc -3'
miRNA:   3'- aCGGGCCa-GUGu--UUCUugCUAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 100708 0.68 0.982428
Target:  5'- gGUCCGGgucugCugGAAGAccaccacgcaGCGAucgUCGUGGg -3'
miRNA:   3'- aCGGGCCa----GugUUUCU----------UGCU---AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 101868 0.68 0.975843
Target:  5'- cGaCCCGGcCGCAGcagccgcGGGCGAaagCGCGGg -3'
miRNA:   3'- aC-GGGCCaGUGUUu------CUUGCUa--GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 102283 0.7 0.9498
Target:  5'- gGCUCGGcgCGCGucgaccgccAGGGCGAcgUCGCGGa -3'
miRNA:   3'- aCGGGCCa-GUGUu--------UCUUGCU--AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 102884 0.66 0.99514
Target:  5'- cGCCCGGaccgacuccaccgugCGCcuGGcGCGGUCGaCGGc -3'
miRNA:   3'- aCGGGCCa--------------GUGuuUCuUGCUAGC-GCC- -5'
9373 3' -52.9 NC_002512.2 + 103676 0.74 0.805912
Target:  5'- cGCCuCGacGUCGCAGAGGGCGGcggaCGCGGc -3'
miRNA:   3'- aCGG-GC--CAGUGUUUCUUGCUa---GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 106723 0.66 0.992508
Target:  5'- gGCCuCGGcCuCGGc-GGCGAUCGCGGc -3'
miRNA:   3'- aCGG-GCCaGuGUUucUUGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 107721 0.73 0.839412
Target:  5'- gGCgCaGGUCGCAGAGGugGGU-GCGGu -3'
miRNA:   3'- aCGgG-CCAGUGUUUCUugCUAgCGCC- -5'
9373 3' -52.9 NC_002512.2 + 108583 0.71 0.926427
Target:  5'- cGCUgUGGUUccggGCGGAGAGCGGUCGCa- -3'
miRNA:   3'- aCGG-GCCAG----UGUUUCUUGCUAGCGcc -5'
9373 3' -52.9 NC_002512.2 + 109153 0.69 0.967613
Target:  5'- cGCCCGGcugCugAGGuGACGgAUCGCGa -3'
miRNA:   3'- aCGGGCCa--GugUUUcUUGC-UAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 109940 0.72 0.870007
Target:  5'- aGCUCGGagACG----GCGAUCGCGGa -3'
miRNA:   3'- aCGGGCCagUGUuucuUGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 111109 0.68 0.982428
Target:  5'- cGCCCGGcgGCGGAGGcgcCGccCGCGGg -3'
miRNA:   3'- aCGGGCCagUGUUUCUu--GCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 111245 0.7 0.936464
Target:  5'- cGCCCGGa-GCGucGGGCGGcaCGCGGa -3'
miRNA:   3'- aCGGGCCagUGUuuCUUGCUa-GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 111347 0.67 0.990279
Target:  5'- cGuCCCGGgcgCGCAcGAGGACGAccCGgGGc -3'
miRNA:   3'- aC-GGGCCa--GUGU-UUCUUGCUa-GCgCC- -5'
9373 3' -52.9 NC_002512.2 + 111529 0.72 0.877154
Target:  5'- cGCCCuGUCACGuAGAGCGAgaucUCcCGGg -3'
miRNA:   3'- aCGGGcCAGUGUuUCUUGCU----AGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 111681 0.69 0.957202
Target:  5'- gGCCCcGUCGCAccAGAcggccucGgGGUCGCGGa -3'
miRNA:   3'- aCGGGcCAGUGUu-UCU-------UgCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 112362 0.74 0.78822
Target:  5'- aGCCCGGaCACcuuGGGcACGAUgGCGGu -3'
miRNA:   3'- aCGGGCCaGUGu--UUCuUGCUAgCGCC- -5'
9373 3' -52.9 NC_002512.2 + 112933 0.71 0.915468
Target:  5'- gGCCCGGUgGCGc---GCGAgccCGCGGa -3'
miRNA:   3'- aCGGGCCAgUGUuucuUGCUa--GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.