miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 132685 0.71 0.903591
Target:  5'- cGCCCGGcccgccgcCGCAGAcGGGCG-UCGUGGg -3'
miRNA:   3'- aCGGGCCa-------GUGUUU-CUUGCuAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 90655 0.71 0.903591
Target:  5'- gGCCgCGGUCuCGGAGucgGCGGcCGCGGc -3'
miRNA:   3'- aCGG-GCCAGuGUUUCu--UGCUaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 112933 0.71 0.915468
Target:  5'- gGCCCGGUgGCGc---GCGAgccCGCGGa -3'
miRNA:   3'- aCGGGCCAgUGUuucuUGCUa--GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 131693 0.71 0.919408
Target:  5'- aGCCCGGagCGCAgguagugcugcucgGAGAcgaugACGggCGCGGa -3'
miRNA:   3'- aCGGGCCa-GUGU--------------UUCU-----UGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 91068 0.71 0.921063
Target:  5'- cGCCUggaGGUCGCAccGGGAGCGGuUCGUGc -3'
miRNA:   3'- aCGGG---CCAGUGU--UUCUUGCU-AGCGCc -5'
9373 3' -52.9 NC_002512.2 + 98154 0.71 0.921063
Target:  5'- cGCCCcggcGGUCGCcgcggucuGGACGggCGCGGc -3'
miRNA:   3'- aCGGG----CCAGUGuuu-----CUUGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 214801 0.71 0.921063
Target:  5'- -cCCUGGUCGCGGAGGuccgucucCGAgagUCGCGGu -3'
miRNA:   3'- acGGGCCAGUGUUUCUu-------GCU---AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 152824 0.71 0.926427
Target:  5'- -cCCCGGUCGaAAAGGAuCGGgccUCGCGGu -3'
miRNA:   3'- acGGGCCAGUgUUUCUU-GCU---AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 108583 0.71 0.926427
Target:  5'- cGCUgUGGUUccggGCGGAGAGCGGUCGCa- -3'
miRNA:   3'- aCGG-GCCAG----UGUUUCUUGCUAGCGcc -5'
9373 3' -52.9 NC_002512.2 + 77580 0.7 0.931561
Target:  5'- cGUCCGaGcCACGccGAGCGGucccUCGCGGa -3'
miRNA:   3'- aCGGGC-CaGUGUuuCUUGCU----AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 213761 0.7 0.931561
Target:  5'- cGCCCGG-CA-----GAUGAUCGCGGu -3'
miRNA:   3'- aCGGGCCaGUguuucUUGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 168130 0.7 0.936464
Target:  5'- gGCCCGGcCGCGgcgaggggcugGGGGugGGggGCGGa -3'
miRNA:   3'- aCGGGCCaGUGU-----------UUCUugCUagCGCC- -5'
9373 3' -52.9 NC_002512.2 + 111245 0.7 0.936464
Target:  5'- cGCCCGGa-GCGucGGGCGGcaCGCGGa -3'
miRNA:   3'- aCGGGCCagUGUuuCUUGCUa-GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 113660 0.7 0.941137
Target:  5'- cGgCCGGcCGC-GAGggUGcgCGCGGg -3'
miRNA:   3'- aCgGGCCaGUGuUUCuuGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 120540 0.7 0.945581
Target:  5'- -cCCCGGcggcucccUCGCAGAGAugGGUgGCGu -3'
miRNA:   3'- acGGGCC--------AGUGUUUCUugCUAgCGCc -5'
9373 3' -52.9 NC_002512.2 + 219846 0.7 0.9498
Target:  5'- gGUCCGGcC-CGGGGGcgGAUCGCGGa -3'
miRNA:   3'- aCGGGCCaGuGUUUCUugCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 222695 0.7 0.9498
Target:  5'- cGCCCGG-CACGGGGAggaguGCG-UCGCc- -3'
miRNA:   3'- aCGGGCCaGUGUUUCU-----UGCuAGCGcc -5'
9373 3' -52.9 NC_002512.2 + 172275 0.7 0.9498
Target:  5'- cGCUCGGUCGCccGGGACaucugccGUCGCGa -3'
miRNA:   3'- aCGGGCCAGUGuuUCUUGc------UAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 192796 0.7 0.9498
Target:  5'- gGCgCGGgCACAAcgccacccGGGGCGAUCGCa- -3'
miRNA:   3'- aCGgGCCaGUGUU--------UCUUGCUAGCGcc -5'
9373 3' -52.9 NC_002512.2 + 102283 0.7 0.9498
Target:  5'- gGCUCGGcgCGCGucgaccgccAGGGCGAcgUCGCGGa -3'
miRNA:   3'- aCGGGCCa-GUGUu--------UCUUGCU--AGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.