miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 106723 0.66 0.992508
Target:  5'- gGCCuCGGcCuCGGc-GGCGAUCGCGGc -3'
miRNA:   3'- aCGG-GCCaGuGUUucUUGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 178554 0.66 0.992508
Target:  5'- aGCCC-GUCACGAuc--CGGUUGUGGu -3'
miRNA:   3'- aCGGGcCAGUGUUucuuGCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 184512 0.66 0.992508
Target:  5'- gGCCCGcGUCcuCGucGcAGCaGUCGCGGg -3'
miRNA:   3'- aCGGGC-CAGu-GUuuC-UUGcUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 206141 0.66 0.991451
Target:  5'- cGUCCGGUCGCca--GACGGUCaUGGc -3'
miRNA:   3'- aCGGGCCAGUGuuucUUGCUAGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 223709 0.66 0.991451
Target:  5'- cUGgCCGGcgacUCGCAcgggGAGGACGAccgggagaccgUCGUGGa -3'
miRNA:   3'- -ACgGGCC----AGUGU----UUCUUGCU-----------AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 146844 0.66 0.991451
Target:  5'- cGCCUGGcC-CAGGGugcuCGAgcucgCGCGGg -3'
miRNA:   3'- aCGGGCCaGuGUUUCuu--GCUa----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 111347 0.67 0.990279
Target:  5'- cGuCCCGGgcgCGCAcGAGGACGAccCGgGGc -3'
miRNA:   3'- aC-GGGCCa--GUGU-UUCUUGCUa-GCgCC- -5'
9373 3' -52.9 NC_002512.2 + 134012 0.67 0.990279
Target:  5'- -cCCCGG--ACGAAGAucugcGCGGUgGCGGa -3'
miRNA:   3'- acGGGCCagUGUUUCU-----UGCUAgCGCC- -5'
9373 3' -52.9 NC_002512.2 + 191044 0.67 0.988985
Target:  5'- gGCgCGGcgCACGuGGAcCGGUCGCGc -3'
miRNA:   3'- aCGgGCCa-GUGUuUCUuGCUAGCGCc -5'
9373 3' -52.9 NC_002512.2 + 211784 0.67 0.988985
Target:  5'- gGCCCGGguggcCGCGGGGGcCGucccgcCGCGGc -3'
miRNA:   3'- aCGGGCCa----GUGUUUCUuGCua----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 35916 0.67 0.988147
Target:  5'- cGCCCGGUUGCGccauGucggaguggcggcauGGAACGAUCGg-- -3'
miRNA:   3'- aCGGGCCAGUGU----U---------------UCUUGCUAGCgcc -5'
9373 3' -52.9 NC_002512.2 + 74808 0.67 0.987561
Target:  5'- cGCCCGGgCACccGGcAGCGGcgGCGGa -3'
miRNA:   3'- aCGGGCCaGUGuuUC-UUGCUagCGCC- -5'
9373 3' -52.9 NC_002512.2 + 75546 0.67 0.987561
Target:  5'- cGCC--GUgGCGGAGGACGAcgaCGCGGa -3'
miRNA:   3'- aCGGgcCAgUGUUUCUUGCUa--GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 91918 0.67 0.987561
Target:  5'- gGCCCGG-CACGcAGGACaucCGCGa -3'
miRNA:   3'- aCGGGCCaGUGUuUCUUGcuaGCGCc -5'
9373 3' -52.9 NC_002512.2 + 122384 0.67 0.987561
Target:  5'- gGUCCaGcCGCAGAGAccgcugcggGcCGGUCGCGGc -3'
miRNA:   3'- aCGGGcCaGUGUUUCU---------U-GCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 217863 0.67 0.987561
Target:  5'- cUGCCCGG-CGUggGGAGCgcguccgaGAUCgGCGGc -3'
miRNA:   3'- -ACGGGCCaGUGuuUCUUG--------CUAG-CGCC- -5'
9373 3' -52.9 NC_002512.2 + 140393 0.67 0.987561
Target:  5'- cGCgCGGUaCACAAAcGucACGuUCGCGGu -3'
miRNA:   3'- aCGgGCCA-GUGUUU-Cu-UGCuAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 169952 0.67 0.985998
Target:  5'- gUGCCCGccCACAuguAGAACagGGUCGgGGc -3'
miRNA:   3'- -ACGGGCcaGUGUu--UCUUG--CUAGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 114199 0.67 0.985998
Target:  5'- gGCCCGGcggcCAUGAGGAGgcggaaGAUgGCGGu -3'
miRNA:   3'- aCGGGCCa---GUGUUUCUUg-----CUAgCGCC- -5'
9373 3' -52.9 NC_002512.2 + 178223 0.67 0.985998
Target:  5'- cGCCacaGGUC-CAGggucuccgGGGACGG-CGCGGu -3'
miRNA:   3'- aCGGg--CCAGuGUU--------UCUUGCUaGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.