miRNA display CGI


Results 41 - 60 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 169952 0.67 0.985998
Target:  5'- gUGCCCGccCACAuguAGAACagGGUCGgGGc -3'
miRNA:   3'- -ACGGGCcaGUGUu--UCUUG--CUAGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 217377 0.67 0.985998
Target:  5'- gGCCUGGUgCACGu---ACGcGUCGUGGa -3'
miRNA:   3'- aCGGGCCA-GUGUuucuUGC-UAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 8862 0.67 0.98429
Target:  5'- gUGCaccguCGGUCACGAAGAagACGAggCuCGGg -3'
miRNA:   3'- -ACGg----GCCAGUGUUUCU--UGCUa-GcGCC- -5'
9373 3' -52.9 NC_002512.2 + 228403 0.67 0.98429
Target:  5'- cUGUCCGGgggacggggCGCuGGGGGGCGGggGCGGg -3'
miRNA:   3'- -ACGGGCCa--------GUG-UUUCUUGCUagCGCC- -5'
9373 3' -52.9 NC_002512.2 + 37737 0.67 0.98429
Target:  5'- cGUCaaggCGGUCACGAcgacggccgcAGAACGGagaCGCGGa -3'
miRNA:   3'- aCGG----GCCAGUGUU----------UCUUGCUa--GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 119357 0.67 0.98429
Target:  5'- cG-CCGGUCACGgcGAcuCGcUCGCGGc -3'
miRNA:   3'- aCgGGCCAGUGUuuCUu-GCuAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 227411 0.67 0.98429
Target:  5'- cGCCCGGaccuacucUCGCGc---GCGggCGCGGg -3'
miRNA:   3'- aCGGGCC--------AGUGUuucuUGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 100708 0.68 0.982428
Target:  5'- gGUCCGGgucugCugGAAGAccaccacgcaGCGAucgUCGUGGg -3'
miRNA:   3'- aCGGGCCa----GugUUUCU----------UGCU---AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 111109 0.68 0.982428
Target:  5'- cGCCCGGcgGCGGAGGcgcCGccCGCGGg -3'
miRNA:   3'- aCGGGCCagUGUUUCUu--GCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 35785 0.68 0.982428
Target:  5'- gGaCCCGGaucgUCACcauucuuGGAgGAUCGCGGa -3'
miRNA:   3'- aC-GGGCC----AGUGuuu----CUUgCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 201761 0.68 0.982428
Target:  5'- -uCCCGGgggaCGgGAGGGACGAgggugagagCGCGGa -3'
miRNA:   3'- acGGGCCa---GUgUUUCUUGCUa--------GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 223305 0.68 0.982428
Target:  5'- gUGCCgcCGGUCgACAccguGAACGGUCG-GGa -3'
miRNA:   3'- -ACGG--GCCAG-UGUuu--CUUGCUAGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 228710 0.68 0.982428
Target:  5'- gUGCuCCGuGUCGCGGGGGaagACGugaUGCGGg -3'
miRNA:   3'- -ACG-GGC-CAGUGUUUCU---UGCua-GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 137265 0.68 0.980404
Target:  5'- cGCUgCGGgauCGAGGAAaaaaGGUCGCGGa -3'
miRNA:   3'- aCGG-GCCaguGUUUCUUg---CUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 172800 0.68 0.980404
Target:  5'- cGCUCGGUCAgCGGAGcuuGCGGUgCGCc- -3'
miRNA:   3'- aCGGGCCAGU-GUUUCu--UGCUA-GCGcc -5'
9373 3' -52.9 NC_002512.2 + 187661 0.68 0.980404
Target:  5'- gGCCaCGGUCACGGuc-ACGGcgGCGGg -3'
miRNA:   3'- aCGG-GCCAGUGUUucuUGCUagCGCC- -5'
9373 3' -52.9 NC_002512.2 + 225517 0.68 0.980404
Target:  5'- gGuCCCGGgcuUCGCGGacGGGACGGcgggagCGCGGa -3'
miRNA:   3'- aC-GGGCC---AGUGUU--UCUUGCUa-----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 211757 0.68 0.978212
Target:  5'- gGCCCGGgCGCugcGGGAgGA-CGUGGa -3'
miRNA:   3'- aCGGGCCaGUGuu-UCUUgCUaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 196376 0.68 0.978212
Target:  5'- gGCCgGGcUCACuucGGGACGc-CGCGGg -3'
miRNA:   3'- aCGGgCC-AGUGuu-UCUUGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 219788 0.68 0.978212
Target:  5'- gGCCCGGccggggaCACAGauagGGGACG--CGCGGg -3'
miRNA:   3'- aCGGGCCa------GUGUU----UCUUGCuaGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.