Results 21 - 40 of 131 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9373 | 3' | -52.9 | NC_002512.2 | + | 155021 | 0.66 | 0.995069 |
Target: 5'- cGuCCCGGgUGCGGuuccGGAGCGgAUCGCGa -3' miRNA: 3'- aC-GGGCCaGUGUU----UCUUGC-UAGCGCc -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 224144 | 0.66 | 0.995069 |
Target: 5'- cGCCgGGagGCGGacgcgugaggcGGGGCGGgggcgCGCGGa -3' miRNA: 3'- aCGGgCCagUGUU-----------UCUUGCUa----GCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 171824 | 0.66 | 0.995069 |
Target: 5'- cUGCCCGG-CAUccgguaccGcGGGACGGUC-CGGc -3' miRNA: 3'- -ACGGGCCaGUG--------UuUCUUGCUAGcGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 99110 | 0.66 | 0.995069 |
Target: 5'- aGCCCGGgcCGCuccAAGA--GAUCGCGc -3' miRNA: 3'- aCGGGCCa-GUGu--UUCUugCUAGCGCc -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 165220 | 0.66 | 0.99485 |
Target: 5'- gGCCCGG---CGAGGAccuccGCGAcgugauccacgaccUCGCGGa -3' miRNA: 3'- aCGGGCCaguGUUUCU-----UGCU--------------AGCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 223262 | 0.66 | 0.994309 |
Target: 5'- cGUCCGcGUCGuCGGGGGGCGGgacgccgCGCGc -3' miRNA: 3'- aCGGGC-CAGU-GUUUCUUGCUa------GCGCc -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 91918 | 0.67 | 0.987561 |
Target: 5'- gGCCCGG-CACGcAGGACaucCGCGa -3' miRNA: 3'- aCGGGCCaGUGUuUCUUGcuaGCGCc -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 75546 | 0.67 | 0.987561 |
Target: 5'- cGCC--GUgGCGGAGGACGAcgaCGCGGa -3' miRNA: 3'- aCGGgcCAgUGUUUCUUGCUa--GCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 74808 | 0.67 | 0.987561 |
Target: 5'- cGCCCGGgCACccGGcAGCGGcgGCGGa -3' miRNA: 3'- aCGGGCCaGUGuuUC-UUGCUagCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 217377 | 0.67 | 0.985998 |
Target: 5'- gGCCUGGUgCACGu---ACGcGUCGUGGa -3' miRNA: 3'- aCGGGCCA-GUGUuucuUGC-UAGCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 169952 | 0.67 | 0.985998 |
Target: 5'- gUGCCCGccCACAuguAGAACagGGUCGgGGc -3' miRNA: 3'- -ACGGGCcaGUGUu--UCUUG--CUAGCgCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 114199 | 0.67 | 0.985998 |
Target: 5'- gGCCCGGcggcCAUGAGGAGgcggaaGAUgGCGGu -3' miRNA: 3'- aCGGGCCa---GUGUUUCUUg-----CUAgCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 122384 | 0.67 | 0.987561 |
Target: 5'- gGUCCaGcCGCAGAGAccgcugcggGcCGGUCGCGGc -3' miRNA: 3'- aCGGGcCaGUGUUUCU---------U-GCUAGCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 217863 | 0.67 | 0.987561 |
Target: 5'- cUGCCCGG-CGUggGGAGCgcguccgaGAUCgGCGGc -3' miRNA: 3'- -ACGGGCCaGUGuuUCUUG--------CUAG-CGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 140393 | 0.67 | 0.987561 |
Target: 5'- cGCgCGGUaCACAAAcGucACGuUCGCGGu -3' miRNA: 3'- aCGgGCCA-GUGUUU-Cu-UGCuAGCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 35916 | 0.67 | 0.988147 |
Target: 5'- cGCCCGGUUGCGccauGucggaguggcggcauGGAACGAUCGg-- -3' miRNA: 3'- aCGGGCCAGUGU----U---------------UCUUGCUAGCgcc -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 211784 | 0.67 | 0.988985 |
Target: 5'- gGCCCGGguggcCGCGGGGGcCGucccgcCGCGGc -3' miRNA: 3'- aCGGGCCa----GUGUUUCUuGCua----GCGCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 191044 | 0.67 | 0.988985 |
Target: 5'- gGCgCGGcgCACGuGGAcCGGUCGCGc -3' miRNA: 3'- aCGgGCCa-GUGUuUCUuGCUAGCGCc -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 111347 | 0.67 | 0.990279 |
Target: 5'- cGuCCCGGgcgCGCAcGAGGACGAccCGgGGc -3' miRNA: 3'- aC-GGGCCa--GUGU-UUCUUGCUa-GCgCC- -5' |
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9373 | 3' | -52.9 | NC_002512.2 | + | 178223 | 0.67 | 0.985998 |
Target: 5'- cGCCacaGGUC-CAGggucuccgGGGACGG-CGCGGu -3' miRNA: 3'- aCGGg--CCAGuGUU--------UCUUGCUaGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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