miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 3' -52.9 NC_002512.2 + 229606 0.69 0.967613
Target:  5'- gGCCCGG--GCGGAGAGgGAgCGgGGa -3'
miRNA:   3'- aCGGGCCagUGUUUCUUgCUaGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 228710 0.68 0.982428
Target:  5'- gUGCuCCGuGUCGCGGGGGaagACGugaUGCGGg -3'
miRNA:   3'- -ACG-GGC-CAGUGUUUCU---UGCua-GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 228403 0.67 0.98429
Target:  5'- cUGUCCGGgggacggggCGCuGGGGGGCGGggGCGGg -3'
miRNA:   3'- -ACGGGCCa--------GUG-UUUCUUGCUagCGCC- -5'
9373 3' -52.9 NC_002512.2 + 227654 0.66 0.993458
Target:  5'- cGCCCgGGUC-CGGAGGAaGAgcgGCGGc -3'
miRNA:   3'- aCGGG-CCAGuGUUUCUUgCUag-CGCC- -5'
9373 3' -52.9 NC_002512.2 + 227411 0.67 0.98429
Target:  5'- cGCCCGGaccuacucUCGCGc---GCGggCGCGGg -3'
miRNA:   3'- aCGGGCC--------AGUGUuucuUGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 225517 0.68 0.980404
Target:  5'- gGuCCCGGgcuUCGCGGacGGGACGGcgggagCGCGGa -3'
miRNA:   3'- aC-GGGCC---AGUGUU--UCUUGCUa-----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 224144 0.66 0.995069
Target:  5'- cGCCgGGagGCGGacgcgugaggcGGGGCGGgggcgCGCGGa -3'
miRNA:   3'- aCGGgCCagUGUU-----------UCUUGCUa----GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 224029 0.69 0.962491
Target:  5'- cGCCCGGgacuccgacggggcCGCcGGGGACGAcUCGuCGGg -3'
miRNA:   3'- aCGGGCCa-------------GUGuUUCUUGCU-AGC-GCC- -5'
9373 3' -52.9 NC_002512.2 + 223709 0.66 0.991451
Target:  5'- cUGgCCGGcgacUCGCAcgggGAGGACGAccgggagaccgUCGUGGa -3'
miRNA:   3'- -ACgGGCC----AGUGU----UUCUUGCU-----------AGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 223503 0.66 0.994309
Target:  5'- cUGCCC-GUCGCGacgaccacggcgGAGAACGGcacgcgccCGCGGc -3'
miRNA:   3'- -ACGGGcCAGUGU------------UUCUUGCUa-------GCGCC- -5'
9373 3' -52.9 NC_002512.2 + 223305 0.68 0.982428
Target:  5'- gUGCCgcCGGUCgACAccguGAACGGUCG-GGa -3'
miRNA:   3'- -ACGG--GCCAG-UGUuu--CUUGCUAGCgCC- -5'
9373 3' -52.9 NC_002512.2 + 223262 0.66 0.994309
Target:  5'- cGUCCGcGUCGuCGGGGGGCGGgacgccgCGCGc -3'
miRNA:   3'- aCGGGC-CAGU-GUUUCUUGCUa------GCGCc -5'
9373 3' -52.9 NC_002512.2 + 222695 0.7 0.9498
Target:  5'- cGCCCGG-CACGGGGAggaguGCG-UCGCc- -3'
miRNA:   3'- aCGGGCCaGUGUUUCU-----UGCuAGCGcc -5'
9373 3' -52.9 NC_002512.2 + 222581 0.66 0.994309
Target:  5'- gGCCCGccGUCGCGGAGGAgGccuGUC-CGGc -3'
miRNA:   3'- aCGGGC--CAGUGUUUCUUgC---UAGcGCC- -5'
9373 3' -52.9 NC_002512.2 + 220521 0.69 0.957569
Target:  5'- cGCCCGGgacCugGAGGAGCugcugCGCGa -3'
miRNA:   3'- aCGGGCCa--GugUUUCUUGcua--GCGCc -5'
9373 3' -52.9 NC_002512.2 + 219846 0.7 0.9498
Target:  5'- gGUCCGGcC-CGGGGGcgGAUCGCGGa -3'
miRNA:   3'- aCGGGCCaGuGUUUCUugCUAGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 219788 0.68 0.978212
Target:  5'- gGCCCGGccggggaCACAGauagGGGACG--CGCGGg -3'
miRNA:   3'- aCGGGCCa------GUGUU----UCUUGCuaGCGCC- -5'
9373 3' -52.9 NC_002512.2 + 218611 0.69 0.957569
Target:  5'- cGCCCGcGgacuCGAAGGACGcgCGuCGGg -3'
miRNA:   3'- aCGGGC-Cagu-GUUUCUUGCuaGC-GCC- -5'
9373 3' -52.9 NC_002512.2 + 217863 0.67 0.987561
Target:  5'- cUGCCCGG-CGUggGGAGCgcguccgaGAUCgGCGGc -3'
miRNA:   3'- -ACGGGCCaGUGuuUCUUG--------CUAG-CGCC- -5'
9373 3' -52.9 NC_002512.2 + 217377 0.67 0.985998
Target:  5'- gGCCUGGUgCACGu---ACGcGUCGUGGa -3'
miRNA:   3'- aCGGGCCA-GUGUuucuUGC-UAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.