miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 5' -54.8 NC_002512.2 + 150912 0.78 0.430613
Target:  5'- gGCCGCGgacGACGCUaagUCCGAGCCGGa -3'
miRNA:   3'- gCGGCGCaa-CUGCGAg--AGGUUUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 220867 0.74 0.633653
Target:  5'- uCGuCCGCGgggccucGGCGCUCUCCAucguGGCCGAc -3'
miRNA:   3'- -GC-GGCGCaa-----CUGCGAGAGGU----UUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 158312 0.72 0.762224
Target:  5'- gGCCGCGgucguccGGCGCgaguccgcgCUCCGGACCGu -3'
miRNA:   3'- gCGGCGCaa-----CUGCGa--------GAGGUUUGGUu -5'
9373 5' -54.8 NC_002512.2 + 224826 0.71 0.816308
Target:  5'- aCGCCGCGggcgggcugGACGCguauacCUCCAcGGCCAu -3'
miRNA:   3'- -GCGGCGCaa-------CUGCGa-----GAGGU-UUGGUu -5'
9373 5' -54.8 NC_002512.2 + 221842 0.7 0.824796
Target:  5'- -cCCGCGggGGCGC-CUCgGGACCGGg -3'
miRNA:   3'- gcGGCGCaaCUGCGaGAGgUUUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 173820 0.7 0.833113
Target:  5'- uGuuGCG--GAUGCUCUCCAuGGCCAGg -3'
miRNA:   3'- gCggCGCaaCUGCGAGAGGU-UUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 74566 0.7 0.85696
Target:  5'- cCGCCGCGaccugGGCGCUCuggugcUCgAGGCCGGg -3'
miRNA:   3'- -GCGGCGCaa---CUGCGAG------AGgUUUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 131367 0.7 0.86452
Target:  5'- aGCCgGCGcgGugGCUCUCgCAGuagGCCAGc -3'
miRNA:   3'- gCGG-CGCaaCugCGAGAG-GUU---UGGUU- -5'
9373 5' -54.8 NC_002512.2 + 164928 0.69 0.885945
Target:  5'- uCGCCGCGU--AUGUUCUUCGagGACCGGg -3'
miRNA:   3'- -GCGGCGCAacUGCGAGAGGU--UUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 221520 0.68 0.905396
Target:  5'- gCGCCGCGgauccucGGCGCUC-CCGccuACCGc -3'
miRNA:   3'- -GCGGCGCaa-----CUGCGAGaGGUu--UGGUu -5'
9373 5' -54.8 NC_002512.2 + 110395 0.68 0.922783
Target:  5'- gGCCGUGUacaUG-UGCUCgCCGGACCGc -3'
miRNA:   3'- gCGGCGCA---ACuGCGAGaGGUUUGGUu -5'
9373 5' -54.8 NC_002512.2 + 201122 0.68 0.933206
Target:  5'- gGUCGCGgUGGCGCUCcaggUCC--ACCAGu -3'
miRNA:   3'- gCGGCGCaACUGCGAG----AGGuuUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 106208 0.68 0.933206
Target:  5'- cCGCCGCGacgGAcCGCUUccCCGAGCCc- -3'
miRNA:   3'- -GCGGCGCaa-CU-GCGAGa-GGUUUGGuu -5'
9373 5' -54.8 NC_002512.2 + 207660 0.67 0.937592
Target:  5'- gGCCGUGgUGGCgucccggGCUCUCCcgccGGCCGAa -3'
miRNA:   3'- gCGGCGCaACUG-------CGAGAGGu---UUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 184377 0.67 0.938067
Target:  5'- cCGCCGCG--GGCGCUUUCgGcguGGCCGc -3'
miRNA:   3'- -GCGGCGCaaCUGCGAGAGgU---UUGGUu -5'
9373 5' -54.8 NC_002512.2 + 221778 0.67 0.938067
Target:  5'- cCGUCGUGUccUGGCGCcugCUCUAcGCCGg -3'
miRNA:   3'- -GCGGCGCA--ACUGCGa--GAGGUuUGGUu -5'
9373 5' -54.8 NC_002512.2 + 214953 0.67 0.940872
Target:  5'- gGCCGCG--GACGCacgggguccggaUCCAGACCGAc -3'
miRNA:   3'- gCGGCGCaaCUGCGag----------AGGUUUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 198365 0.67 0.950854
Target:  5'- cCGCCGUGUccGugGC-CUCCGugaucaggcucugGACCAu -3'
miRNA:   3'- -GCGGCGCAa-CugCGaGAGGU-------------UUGGUu -5'
9373 5' -54.8 NC_002512.2 + 101905 0.67 0.951261
Target:  5'- aCGCCGaCGggGGCggcguGUUCUCCAugcgggGACCGAc -3'
miRNA:   3'- -GCGGC-GCaaCUG-----CGAGAGGU------UUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 141608 0.67 0.951261
Target:  5'- aGCCGCGUcccgacacgccUGcCGCcaccUCUCCAAcaccGCCGAc -3'
miRNA:   3'- gCGGCGCA-----------ACuGCG----AGAGGUU----UGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.