miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9373 5' -54.8 NC_002512.2 + 73342 0.66 0.971677
Target:  5'- aGCCGUc---ACGCgCUCCGAACCGg -3'
miRNA:   3'- gCGGCGcaacUGCGaGAGGUUUGGUu -5'
9373 5' -54.8 NC_002512.2 + 74566 0.7 0.85696
Target:  5'- cCGCCGCGaccugGGCGCUCuggugcUCgAGGCCGGg -3'
miRNA:   3'- -GCGGCGCaa---CUGCGAG------AGgUUUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 76528 0.66 0.968798
Target:  5'- uGCCG-GcUGACGUUCugaugaaggaUCCGAACCGGa -3'
miRNA:   3'- gCGGCgCaACUGCGAG----------AGGUUUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 76598 0.66 0.962427
Target:  5'- aCGCCgGCGUcgGACGuCUgUCCGGggccGCCAu -3'
miRNA:   3'- -GCGG-CGCAa-CUGC-GAgAGGUU----UGGUu -5'
9373 5' -54.8 NC_002512.2 + 101905 0.67 0.951261
Target:  5'- aCGCCGaCGggGGCggcguGUUCUCCAugcgggGACCGAc -3'
miRNA:   3'- -GCGGC-GCaaCUG-----CGAGAGGU------UUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 106208 0.68 0.933206
Target:  5'- cCGCCGCGacgGAcCGCUUccCCGAGCCc- -3'
miRNA:   3'- -GCGGCGCaa-CU-GCGAGa-GGUUUGGuu -5'
9373 5' -54.8 NC_002512.2 + 110395 0.68 0.922783
Target:  5'- gGCCGUGUacaUG-UGCUCgCCGGACCGc -3'
miRNA:   3'- gCGGCGCA---ACuGCGAGaGGUUUGGUu -5'
9373 5' -54.8 NC_002512.2 + 116137 0.66 0.97436
Target:  5'- aCGCCGCGUaucGugGUcggcaacaUCcCCGAGCCGc -3'
miRNA:   3'- -GCGGCGCAa--CugCG--------AGaGGUUUGGUu -5'
9373 5' -54.8 NC_002512.2 + 131367 0.7 0.86452
Target:  5'- aGCCgGCGcgGugGCUCUCgCAGuagGCCAGc -3'
miRNA:   3'- gCGG-CGCaaCugCGAGAG-GUU---UGGUU- -5'
9373 5' -54.8 NC_002512.2 + 134693 0.66 0.974617
Target:  5'- gCGaCCGCGgacguccucucgcgGGCGCUCUCC--GCCu- -3'
miRNA:   3'- -GC-GGCGCaa------------CUGCGAGAGGuuUGGuu -5'
9373 5' -54.8 NC_002512.2 + 141608 0.67 0.951261
Target:  5'- aGCCGCGUcccgacacgccUGcCGCcaccUCUCCAAcaccGCCGAc -3'
miRNA:   3'- gCGGCGCA-----------ACuGCG----AGAGGUU----UGGUU- -5'
9373 5' -54.8 NC_002512.2 + 144304 0.66 0.971677
Target:  5'- --aCGCGgacGCGCUCUCCcGGCCGc -3'
miRNA:   3'- gcgGCGCaacUGCGAGAGGuUUGGUu -5'
9373 5' -54.8 NC_002512.2 + 150164 0.66 0.971677
Target:  5'- aGCC-CGUccuCGCUCUCCcuGCCGGg -3'
miRNA:   3'- gCGGcGCAacuGCGAGAGGuuUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 150912 0.78 0.430613
Target:  5'- gGCCGCGgacGACGCUaagUCCGAGCCGGa -3'
miRNA:   3'- gCGGCGCaa-CUGCGAg--AGGUUUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 158312 0.72 0.762224
Target:  5'- gGCCGCGgucguccGGCGCgaguccgcgCUCCGGACCGu -3'
miRNA:   3'- gCGGCGCaa-----CUGCGa--------GAGGUUUGGUu -5'
9373 5' -54.8 NC_002512.2 + 164928 0.69 0.885945
Target:  5'- uCGCCGCGU--AUGUUCUUCGagGACCGGg -3'
miRNA:   3'- -GCGGCGCAacUGCGAGAGGU--UUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 171056 0.66 0.961399
Target:  5'- aCGCCGcCGUccuucacgagaagaUGAgGCUCUUCAcGGCCGu -3'
miRNA:   3'- -GCGGC-GCA--------------ACUgCGAGAGGU-UUGGUu -5'
9373 5' -54.8 NC_002512.2 + 173820 0.7 0.833113
Target:  5'- uGuuGCG--GAUGCUCUCCAuGGCCAGg -3'
miRNA:   3'- gCggCGCaaCUGCGAGAGGU-UUGGUU- -5'
9373 5' -54.8 NC_002512.2 + 176405 0.66 0.962086
Target:  5'- gCGCCGCGUcGugGCaccUgUCCAGcagggugGCCAu -3'
miRNA:   3'- -GCGGCGCAaCugCG---AgAGGUU-------UGGUu -5'
9373 5' -54.8 NC_002512.2 + 180563 0.66 0.97436
Target:  5'- uGCgGCGggcuccgGugGCUCUCUAucagGGCCGu -3'
miRNA:   3'- gCGgCGCaa-----CugCGAGAGGU----UUGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.