miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9374 3' -53.9 NC_002512.2 + 225527 0.67 0.969519
Target:  5'- uUCGCGGACGGgACGG-CGGgagCGCgGa -3'
miRNA:   3'- -GGUGCCUGUCgUGUCaGCUaa-GCGgU- -5'
9374 3' -53.9 NC_002512.2 + 221445 0.68 0.956282
Target:  5'- aCCGCGGccGgGGCGCGGUCGuc-CGaCCGg -3'
miRNA:   3'- -GGUGCC--UgUCGUGUCAGCuaaGC-GGU- -5'
9374 3' -53.9 NC_002512.2 + 219487 0.66 0.988453
Target:  5'- cCCugGGGCGGguCAGaCGAggaugcUgGCCGg -3'
miRNA:   3'- -GGugCCUGUCguGUCaGCUa-----AgCGGU- -5'
9374 3' -53.9 NC_002512.2 + 217788 0.69 0.934856
Target:  5'- gUCGCGGcCGGCugGCGGaUCGGcgUCGCCGu -3'
miRNA:   3'- -GGUGCCuGUCG--UGUC-AGCUa-AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 214954 0.66 0.985537
Target:  5'- gCCGCGGAC-GCACGGgguccggauccagacCGA--CGCCGa -3'
miRNA:   3'- -GGUGCCUGuCGUGUCa--------------GCUaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 214752 0.66 0.983608
Target:  5'- gCGCGGaACAGCgugccgucGCAGUCcgg-CGCCGg -3'
miRNA:   3'- gGUGCC-UGUCG--------UGUCAGcuaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 212936 0.67 0.969519
Target:  5'- --uCGGGCGGCcCGGUCcGAgUCGCCc -3'
miRNA:   3'- gguGCCUGUCGuGUCAG-CUaAGCGGu -5'
9374 3' -53.9 NC_002512.2 + 208549 0.67 0.974934
Target:  5'- cCUGCGGAuCAGCAgGG-CGGUgCGUCAg -3'
miRNA:   3'- -GGUGCCU-GUCGUgUCaGCUAaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 206119 0.67 0.969519
Target:  5'- aCCAgGGucaGGCGCAG-CGGggcguccggUCGCCAg -3'
miRNA:   3'- -GGUgCCug-UCGUGUCaGCUa--------AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 203374 0.68 0.959905
Target:  5'- gCCGCGGuugcuCAGCAuCAGgaaCGGcagcgUCGCCAc -3'
miRNA:   3'- -GGUGCCu----GUCGU-GUCa--GCUa----AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 202466 0.68 0.963316
Target:  5'- uCCGCGGACgcucGGCgACGGcggCGAUcUGCCGa -3'
miRNA:   3'- -GGUGCCUG----UCG-UGUCa--GCUAaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 201791 0.69 0.934856
Target:  5'- gCGCGGACGGgGCGG-CGAccucucCGCCGu -3'
miRNA:   3'- gGUGCCUGUCgUGUCaGCUaa----GCGGU- -5'
9374 3' -53.9 NC_002512.2 + 195057 0.66 0.986981
Target:  5'- cCCGCGGGCGGgAgGGUCGuccgGUCGg -3'
miRNA:   3'- -GGUGCCUGUCgUgUCAGCuaagCGGU- -5'
9374 3' -53.9 NC_002512.2 + 191485 0.67 0.969519
Target:  5'- gCGcCGGACAGCGCGG-CGAccggCGCg- -3'
miRNA:   3'- gGU-GCCUGUCGUGUCaGCUaa--GCGgu -5'
9374 3' -53.9 NC_002512.2 + 189615 0.67 0.976653
Target:  5'- gCGCGG-CGGCcgcacgcgaucgucGCGGUCGGcUUCGUCGg -3'
miRNA:   3'- gGUGCCuGUCG--------------UGUCAGCU-AAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 189205 0.74 0.75914
Target:  5'- gCCGCGGGCGGCAUgcUCGAcgucggauccguccgUCGCCGu -3'
miRNA:   3'- -GGUGCCUGUCGUGucAGCUa--------------AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 189119 0.66 0.985369
Target:  5'- gCC-CGGACGcGCgAUAGg-GGUUCGCCGg -3'
miRNA:   3'- -GGuGCCUGU-CG-UGUCagCUAAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 185850 0.66 0.988453
Target:  5'- uUCugGGAgCGGUAC-GUCGAggagggCGCCu -3'
miRNA:   3'- -GGugCCU-GUCGUGuCAGCUaa----GCGGu -5'
9374 3' -53.9 NC_002512.2 + 184889 0.66 0.983608
Target:  5'- gCCACGGGguCAGCggGCGG-CGGcgcuacugccccUUCGCCGa -3'
miRNA:   3'- -GGUGCCU--GUCG--UGUCaGCU------------AAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 184466 0.7 0.907738
Target:  5'- gCCGCGGcCGGCGCcgccGUCGAg-CGCCc -3'
miRNA:   3'- -GGUGCCuGUCGUGu---CAGCUaaGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.