Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9374 | 3' | -53.9 | NC_002512.2 | + | 76161 | 0.71 | 0.888749 |
Target: 5'- cCCACGGACAGCGCcGUgaGAccCGaCCAg -3' miRNA: 3'- -GGUGCCUGUCGUGuCAg-CUaaGC-GGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 92544 | 0.66 | 0.988453 |
Target: 5'- gCCGCGGcggccGCGGCgACGacGUCGGaggCGCCGa -3' miRNA: 3'- -GGUGCC-----UGUCG-UGU--CAGCUaa-GCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 96473 | 0.72 | 0.828925 |
Target: 5'- gCGCGGACcGCGCGGcCGucUCGCCc -3' miRNA: 3'- gGUGCCUGuCGUGUCaGCuaAGCGGu -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 101432 | 0.66 | 0.985369 |
Target: 5'- gCgGCGGccgGCGGCGCGG-CGA--CGCCGa -3' miRNA: 3'- -GgUGCC---UGUCGUGUCaGCUaaGCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 101884 | 0.68 | 0.959905 |
Target: 5'- gCCGCGGGCgaaAGCGCGGg-GA--CGCCGa -3' miRNA: 3'- -GGUGCCUG---UCGUGUCagCUaaGCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 103352 | 0.84 | 0.27163 |
Target: 5'- -gGCGGACGGCACGGUCGAggucaggcCGCCGg -3' miRNA: 3'- ggUGCCUGUCGUGUCAGCUaa------GCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 104135 | 0.68 | 0.956282 |
Target: 5'- aUCACGGACgGGCugGGggacgCGA--CGCCGg -3' miRNA: 3'- -GGUGCCUG-UCGugUCa----GCUaaGCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 104359 | 0.68 | 0.959905 |
Target: 5'- gCCGCGG-CGGCACGGcaagacgUGGUUCaCCAu -3' miRNA: 3'- -GGUGCCuGUCGUGUCa------GCUAAGcGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 104559 | 0.72 | 0.819764 |
Target: 5'- aCCAcCGGACggcgaagAGCACGG-CGcuGUUCGCCAg -3' miRNA: 3'- -GGU-GCCUG-------UCGUGUCaGC--UAAGCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 106467 | 0.67 | 0.969519 |
Target: 5'- gCACGGGCGGCGgGaccUCGAccgccUCGCCGu -3' miRNA: 3'- gGUGCCUGUCGUgUc--AGCUa----AGCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 106774 | 0.73 | 0.767508 |
Target: 5'- gCCGCcGACGGCGCGGgaCGGUUcCGCCGg -3' miRNA: 3'- -GGUGcCUGUCGUGUCa-GCUAA-GCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 108246 | 0.69 | 0.939592 |
Target: 5'- gCCGCGaGAUccaGGaCGCGGagccgCGAUUCGCCGg -3' miRNA: 3'- -GGUGC-CUG---UC-GUGUCa----GCUAAGCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 109955 | 0.7 | 0.9176 |
Target: 5'- aUCGCGGACuGCGCGucgcacaugcuccuGUCGAUccugUCGCUg -3' miRNA: 3'- -GGUGCCUGuCGUGU--------------CAGCUA----AGCGGu -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 110618 | 0.69 | 0.924696 |
Target: 5'- uCCugGG-CGGCGCAGaccaUgGggUCGCCGg -3' miRNA: 3'- -GGugCCuGUCGUGUC----AgCuaAGCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 110666 | 0.75 | 0.70044 |
Target: 5'- aCCGCGGGCAGC-CGGUCcuGGUgcUCGCgCAg -3' miRNA: 3'- -GGUGCCUGUCGuGUCAG--CUA--AGCG-GU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 112951 | 0.66 | 0.988453 |
Target: 5'- cCCGCGGACcgGGUcgaAGUCGAa--GCCGg -3' miRNA: 3'- -GGUGCCUG--UCGug-UCAGCUaagCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 122263 | 0.71 | 0.867809 |
Target: 5'- aCCACGGGCAGC-CGccCGAcUCGCUg -3' miRNA: 3'- -GGUGCCUGUCGuGUcaGCUaAGCGGu -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 123169 | 0.66 | 0.98305 |
Target: 5'- -gGCGGACaggAGCGCGGUC-AUcccggagagccccaUCGCCGa -3' miRNA: 3'- ggUGCCUG---UCGUGUCAGcUA--------------AGCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 127656 | 0.69 | 0.929891 |
Target: 5'- gCuCGGACGGC-CGGUCGAgg-GCCGc -3' miRNA: 3'- gGuGCCUGUCGuGUCAGCUaagCGGU- -5' |
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9374 | 3' | -53.9 | NC_002512.2 | + | 132540 | 0.76 | 0.600601 |
Target: 5'- uCCGCGGGCGGCGCcGUCGGccucucCGCCc -3' miRNA: 3'- -GGUGCCUGUCGUGuCAGCUaa----GCGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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