miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9374 3' -53.9 NC_002512.2 + 138653 0.66 0.989793
Target:  5'- aCGCGGcgucccugACgAGCACGGUgGAcUCGCUg -3'
miRNA:   3'- gGUGCC--------UG-UCGUGUCAgCUaAGCGGu -5'
9374 3' -53.9 NC_002512.2 + 139570 0.66 0.986981
Target:  5'- aCCugGGACAGCGCuaaccUCcGUUCGgCu -3'
miRNA:   3'- -GGugCCUGUCGUGuc---AGcUAAGCgGu -5'
9374 3' -53.9 NC_002512.2 + 149257 0.66 0.986981
Target:  5'- gCCGCGGACGGCcggACGGguacgaCGAggagCGCgAg -3'
miRNA:   3'- -GGUGCCUGUCG---UGUCa-----GCUaa--GCGgU- -5'
9374 3' -53.9 NC_002512.2 + 150416 0.68 0.966519
Target:  5'- cCCACGGGC-GCGCGGUCGc--C-CCGa -3'
miRNA:   3'- -GGUGCCUGuCGUGUCAGCuaaGcGGU- -5'
9374 3' -53.9 NC_002512.2 + 150956 0.72 0.820605
Target:  5'- gCCGCGGACucggaGGCGgGcUCGcgUCGCCAu -3'
miRNA:   3'- -GGUGCCUG-----UCGUgUcAGCuaAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 152351 0.66 0.986981
Target:  5'- aCCGCGGACcuccgAGCACGGagacCGGccgUgGCCGg -3'
miRNA:   3'- -GGUGCCUG-----UCGUGUCa---GCUa--AgCGGU- -5'
9374 3' -53.9 NC_002512.2 + 158490 0.67 0.979612
Target:  5'- uCCGCGGG-GGCGCAGgacuuccgCGGccugCGCCAg -3'
miRNA:   3'- -GGUGCCUgUCGUGUCa-------GCUaa--GCGGU- -5'
9374 3' -53.9 NC_002512.2 + 159392 0.66 0.988453
Target:  5'- cCCGCGGcguCGGgGCGGaaGGUccggUCGCCAa -3'
miRNA:   3'- -GGUGCCu--GUCgUGUCagCUA----AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 161518 0.66 0.985369
Target:  5'- gCGCGGACGGCACcGcCGA---GCCc -3'
miRNA:   3'- gGUGCCUGUCGUGuCaGCUaagCGGu -5'
9374 3' -53.9 NC_002512.2 + 165976 0.71 0.860416
Target:  5'- gCUGCGG-CGGgGCGGUCGGUucuUCGUCAa -3'
miRNA:   3'- -GGUGCCuGUCgUGUCAGCUA---AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 168588 0.68 0.952443
Target:  5'- aUCugGaACAGCuGCGGUUGGUUgGCCGa -3'
miRNA:   3'- -GGugCcUGUCG-UGUCAGCUAAgCGGU- -5'
9374 3' -53.9 NC_002512.2 + 168974 0.66 0.989404
Target:  5'- uUCGCGGuCGGUguccgcucgaccgaGCGGUCGcg-CGCCGg -3'
miRNA:   3'- -GGUGCCuGUCG--------------UGUCAGCuaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 169344 0.66 0.986981
Target:  5'- gCCgACGGAUAcGCGuuuGUCGAgcagaUCGCCAg -3'
miRNA:   3'- -GG-UGCCUGU-CGUgu-CAGCUa----AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 170473 0.69 0.934856
Target:  5'- gCACaGGuuGCAGCGCGuGUCGAUcuccagCGCCAc -3'
miRNA:   3'- gGUG-CC--UGUCGUGU-CAGCUAa-----GCGGU- -5'
9374 3' -53.9 NC_002512.2 + 174978 0.7 0.907738
Target:  5'- cCCACaGGCAGCGCAGcaccuccuUCGGcaggaucuucgUCGCCAg -3'
miRNA:   3'- -GGUGcCUGUCGUGUC--------AGCUa----------AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 176148 0.66 0.981692
Target:  5'- uCCGCGGACGucGCGCAGcagcUCGAaguaccUgGCCGa -3'
miRNA:   3'- -GGUGCCUGU--CGUGUC----AGCUa-----AgCGGU- -5'
9374 3' -53.9 NC_002512.2 + 176578 0.69 0.939592
Target:  5'- uUCACGGcCAGCACcguGUCGc-UCGUCAg -3'
miRNA:   3'- -GGUGCCuGUCGUGu--CAGCuaAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 178241 0.79 0.46559
Target:  5'- uCCGgGGACGGCGCGGUCuccgGGUccgUCGCCAu -3'
miRNA:   3'- -GGUgCCUGUCGUGUCAG----CUA---AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 179308 0.69 0.929891
Target:  5'- uCCGCGGGCGGCgagGCGGgcaGAUccugcagCGCCGc -3'
miRNA:   3'- -GGUGCCUGUCG---UGUCag-CUAa------GCGGU- -5'
9374 3' -53.9 NC_002512.2 + 182211 0.66 0.989793
Target:  5'- cCCGggUGGaACAGCACGuUCGGcggCGCCAc -3'
miRNA:   3'- -GGU--GCC-UGUCGUGUcAGCUaa-GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.