miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9374 3' -53.9 NC_002512.2 + 176148 0.66 0.981692
Target:  5'- uCCGCGGACGucGCGCAGcagcUCGAaguaccUgGCCGa -3'
miRNA:   3'- -GGUGCCUGU--CGUGUC----AGCUa-----AgCGGU- -5'
9374 3' -53.9 NC_002512.2 + 158490 0.67 0.979612
Target:  5'- uCCGCGGG-GGCGCAGgacuuccgCGGccugCGCCAg -3'
miRNA:   3'- -GGUGCCUgUCGUGUCa-------GCUaa--GCGGU- -5'
9374 3' -53.9 NC_002512.2 + 189615 0.67 0.976653
Target:  5'- gCGCGG-CGGCcgcacgcgaucgucGCGGUCGGcUUCGUCGg -3'
miRNA:   3'- gGUGCCuGUCG--------------UGUCAGCU-AAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 208549 0.67 0.974934
Target:  5'- cCUGCGGAuCAGCAgGG-CGGUgCGUCAg -3'
miRNA:   3'- -GGUGCCU-GUCGUgUCaGCUAaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 106467 0.67 0.969519
Target:  5'- gCACGGGCGGCGgGaccUCGAccgccUCGCCGu -3'
miRNA:   3'- gGUGCCUGUCGUgUc--AGCUa----AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 212936 0.67 0.969519
Target:  5'- --uCGGGCGGCcCGGUCcGAgUCGCCc -3'
miRNA:   3'- gguGCCUGUCGuGUCAG-CUaAGCGGu -5'
9374 3' -53.9 NC_002512.2 + 225527 0.67 0.969519
Target:  5'- uUCGCGGACGGgACGG-CGGgagCGCgGa -3'
miRNA:   3'- -GGUGCCUGUCgUGUCaGCUaa-GCGgU- -5'
9374 3' -53.9 NC_002512.2 + 191485 0.67 0.969519
Target:  5'- gCGcCGGACAGCGCGG-CGAccggCGCg- -3'
miRNA:   3'- gGU-GCCUGUCGUGUCaGCUaa--GCGgu -5'
9374 3' -53.9 NC_002512.2 + 206119 0.67 0.969519
Target:  5'- aCCAgGGucaGGCGCAG-CGGggcguccggUCGCCAg -3'
miRNA:   3'- -GGUgCCug-UCGUGUCaGCUa--------AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 150416 0.68 0.966519
Target:  5'- cCCACGGGC-GCGCGGUCGc--C-CCGa -3'
miRNA:   3'- -GGUGCCUGuCGUGUCAGCuaaGcGGU- -5'
9374 3' -53.9 NC_002512.2 + 202466 0.68 0.963316
Target:  5'- uCCGCGGACgcucGGCgACGGcggCGAUcUGCCGa -3'
miRNA:   3'- -GGUGCCUG----UCG-UGUCa--GCUAaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 101884 0.68 0.959905
Target:  5'- gCCGCGGGCgaaAGCGCGGg-GA--CGCCGa -3'
miRNA:   3'- -GGUGCCUG---UCGUGUCagCUaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 104359 0.68 0.959905
Target:  5'- gCCGCGG-CGGCACGGcaagacgUGGUUCaCCAu -3'
miRNA:   3'- -GGUGCCuGUCGUGUCa------GCUAAGcGGU- -5'
9374 3' -53.9 NC_002512.2 + 203374 0.68 0.959905
Target:  5'- gCCGCGGuugcuCAGCAuCAGgaaCGGcagcgUCGCCAc -3'
miRNA:   3'- -GGUGCCu----GUCGU-GUCa--GCUa----AGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 221445 0.68 0.956282
Target:  5'- aCCGCGGccGgGGCGCGGUCGuc-CGaCCGg -3'
miRNA:   3'- -GGUGCC--UgUCGUGUCAGCuaaGC-GGU- -5'
9374 3' -53.9 NC_002512.2 + 104135 0.68 0.956282
Target:  5'- aUCACGGACgGGCugGGggacgCGA--CGCCGg -3'
miRNA:   3'- -GGUGCCUG-UCGugUCa----GCUaaGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 168588 0.68 0.952443
Target:  5'- aUCugGaACAGCuGCGGUUGGUUgGCCGa -3'
miRNA:   3'- -GGugCcUGUCG-UGUCAGCUAAgCGGU- -5'
9374 3' -53.9 NC_002512.2 + 108246 0.69 0.939592
Target:  5'- gCCGCGaGAUccaGGaCGCGGagccgCGAUUCGCCGg -3'
miRNA:   3'- -GGUGC-CUG---UC-GUGUCa----GCUAAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 176578 0.69 0.939592
Target:  5'- uUCACGGcCAGCACcguGUCGc-UCGUCAg -3'
miRNA:   3'- -GGUGCCuGUCGUGu--CAGCuaAGCGGU- -5'
9374 3' -53.9 NC_002512.2 + 201791 0.69 0.934856
Target:  5'- gCGCGGACGGgGCGG-CGAccucucCGCCGu -3'
miRNA:   3'- gGUGCCUGUCgUGUCaGCUaa----GCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.