miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 5' -56.8 NC_002512.2 + 161618 0.86 0.117027
Target:  5'- gGUGuGGGCCCACGUCCGGGAACUGGUu -3'
miRNA:   3'- aCGC-CCUGGGUGCAGGUCUUUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 162229 0.73 0.580179
Target:  5'- cGaCGGucgaGCCCGCGUCCGGggGCCcGUg -3'
miRNA:   3'- aC-GCCc---UGGGUGCAGGUCuuUGGuCA- -5'
9375 5' -56.8 NC_002512.2 + 164492 0.68 0.865041
Target:  5'- -aCGaGGACuCCACGUCCcaggGGAAGCgCGGUa -3'
miRNA:   3'- acGC-CCUG-GGUGCAGG----UCUUUG-GUCA- -5'
9375 5' -56.8 NC_002512.2 + 166620 0.66 0.946159
Target:  5'- --aGGGcUCCGCGUCCGGGAACg--- -3'
miRNA:   3'- acgCCCuGGGUGCAGGUCUUUGguca -5'
9375 5' -56.8 NC_002512.2 + 167831 0.67 0.91099
Target:  5'- gGcCGaGGACCCcgcgcACGUCCGgGAGGCCAa- -3'
miRNA:   3'- aC-GC-CCUGGG-----UGCAGGU-CUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 173394 0.66 0.941806
Target:  5'- -aCGGGACCguCGUCCugcGGGACCu-- -3'
miRNA:   3'- acGCCCUGGguGCAGGu--CUUUGGuca -5'
9375 5' -56.8 NC_002512.2 + 174334 0.67 0.916687
Target:  5'- gGCGGGgguccgccgcGCCCuCGUCCgccGGGAugCGGa -3'
miRNA:   3'- aCGCCC----------UGGGuGCAGG---UCUUugGUCa -5'
9375 5' -56.8 NC_002512.2 + 177072 0.69 0.834361
Target:  5'- aGcCGGuGACCCGCGUCCGucAGCCc-- -3'
miRNA:   3'- aC-GCC-CUGGGUGCAGGUcuUUGGuca -5'
9375 5' -56.8 NC_002512.2 + 181025 0.67 0.905071
Target:  5'- --gGGaGGCCCGCGUCCugggcaGGAGGCCGc- -3'
miRNA:   3'- acgCC-CUGGGUGCAGG------UCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 185217 0.74 0.570369
Target:  5'- cGCGGuGGCCCGCGUCguGGAACg--- -3'
miRNA:   3'- aCGCC-CUGGGUGCAGguCUUUGguca -5'
9375 5' -56.8 NC_002512.2 + 190871 0.7 0.745684
Target:  5'- cUGCGGGGggcuuucCCCGCGUCgCGGGgcgaggcgAACCGGa -3'
miRNA:   3'- -ACGCCCU-------GGGUGCAG-GUCU--------UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 191661 0.71 0.737194
Target:  5'- gGCGGaGACguCCGCGUCCcGggGCUGGg -3'
miRNA:   3'- aCGCC-CUG--GGUGCAGGuCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 195341 0.68 0.872233
Target:  5'- gUGCGuGACCCgGCG-CCGGGAACCccgGGUg -3'
miRNA:   3'- -ACGCcCUGGG-UGCaGGUCUUUGG---UCA- -5'
9375 5' -56.8 NC_002512.2 + 199884 0.68 0.879222
Target:  5'- gGCGGcucGCCCugGUCUcGAGACCGc- -3'
miRNA:   3'- aCGCCc--UGGGugCAGGuCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 204721 0.69 0.826243
Target:  5'- gGCGGG-CCCGgGgCgGGggGCCGGa -3'
miRNA:   3'- aCGCCCuGGGUgCaGgUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 204803 0.66 0.946159
Target:  5'- -cCGGGAggUCCGCGUCcCGGggGCgCGGc -3'
miRNA:   3'- acGCCCU--GGGUGCAG-GUCuuUG-GUCa -5'
9375 5' -56.8 NC_002512.2 + 204964 0.66 0.941806
Target:  5'- cUGCGGGccgagcccgACgCCGCGggcgaCGGGGACCGGa -3'
miRNA:   3'- -ACGCCC---------UG-GGUGCag---GUCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 205300 0.71 0.727679
Target:  5'- aGCGGucCCCGCGUCgAcGGACCGGg -3'
miRNA:   3'- aCGCCcuGGGUGCAGgUcUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 206134 0.66 0.932431
Target:  5'- aGCGGG----GCGUCCGGucGCCAGa -3'
miRNA:   3'- aCGCCCugggUGCAGGUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 209031 0.7 0.765189
Target:  5'- aGCGGGGCggCCGCGUCCcGGAGCg--- -3'
miRNA:   3'- aCGCCCUG--GGUGCAGGuCUUUGguca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.