miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 5' -56.8 NC_002512.2 + 129242 0.67 0.904467
Target:  5'- cGCGGGACUgcugCGCGgggcgaUCCAGGacuagggGACCGGg -3'
miRNA:   3'- aCGCCCUGG----GUGC------AGGUCU-------UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 132016 0.7 0.752235
Target:  5'- gGgGGGACCUcgGCGgcgacgucgucggCCAGGGACCGGa -3'
miRNA:   3'- aCgCCCUGGG--UGCa------------GGUCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 132414 0.66 0.93723
Target:  5'- gGgGGGAUcgaCCGCGgcgaUCCAGA-ACCGGUu -3'
miRNA:   3'- aCgCCCUG---GGUGC----AGGUCUuUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 133599 0.66 0.926376
Target:  5'- gGCGGcGGCCCGCGgcagCCcccccgccuGCCGGUg -3'
miRNA:   3'- aCGCC-CUGGGUGCa---GGucuu-----UGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 134608 0.66 0.926893
Target:  5'- cGaCGGGAacccgacCCCGcCGUUCAGGAGCCGc- -3'
miRNA:   3'- aC-GCCCU-------GGGU-GCAGGUCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 145615 0.66 0.925857
Target:  5'- gGCGGGcguucgGCCCgcugcccgccuuccGCGUCgAGAuGCCGGg -3'
miRNA:   3'- aCGCCC------UGGG--------------UGCAGgUCUuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 145798 0.67 0.916687
Target:  5'- gGUGGaGGCCCGCcagaaGUUCuGGGACCAGc -3'
miRNA:   3'- aCGCC-CUGGGUG-----CAGGuCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 146870 0.71 0.698703
Target:  5'- cGCGGGGCCacuacCGcCCGGAGGcCCAGg -3'
miRNA:   3'- aCGCCCUGGgu---GCaGGUCUUU-GGUCa -5'
9375 5' -56.8 NC_002512.2 + 147449 0.66 0.941358
Target:  5'- aGCGGGACCgACGcccccucguccccUCCGccgcGGGACCAc- -3'
miRNA:   3'- aCGCCCUGGgUGC-------------AGGU----CUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 148131 0.67 0.898932
Target:  5'- gGUGGuGACCCACGaCCAGcucauGAACaCGGa -3'
miRNA:   3'- aCGCC-CUGGGUGCaGGUC-----UUUG-GUCa -5'
9375 5' -56.8 NC_002512.2 + 148426 0.69 0.817959
Target:  5'- cUGCGGGACCgC-CGggggaggaCGGggGCCGGg -3'
miRNA:   3'- -ACGCCCUGG-GuGCag------GUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 149141 0.7 0.774309
Target:  5'- -cCGGGACCCGgGaccgCCGcGggGCCGGUg -3'
miRNA:   3'- acGCCCUGGGUgCa---GGU-CuuUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 149230 0.67 0.905071
Target:  5'- cGCGGGACCgACGgacCCGGc-GCCGc- -3'
miRNA:   3'- aCGCCCUGGgUGCa--GGUCuuUGGUca -5'
9375 5' -56.8 NC_002512.2 + 150000 0.7 0.759662
Target:  5'- cGCGGGaACCCACGccggggcucucuuccUCCuccgaggacgaGGggGCCGGg -3'
miRNA:   3'- aCGCCC-UGGGUGC---------------AGG-----------UCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 151070 0.66 0.93676
Target:  5'- gGCGGGGgaugcggucucggUCCGCG-CCGGAGACguGc -3'
miRNA:   3'- aCGCCCU-------------GGGUGCaGGUCUUUGguCa -5'
9375 5' -56.8 NC_002512.2 + 157045 0.69 0.826243
Target:  5'- aGCGaGGACCCcggcaaggcggGCGUCCcGggGuCCGGg -3'
miRNA:   3'- aCGC-CCUGGG-----------UGCAGGuCuuU-GGUCa -5'
9375 5' -56.8 NC_002512.2 + 159002 0.69 0.800922
Target:  5'- gGCGGcGGCCCcgGCGUCCGc--GCCGGg -3'
miRNA:   3'- aCGCC-CUGGG--UGCAGGUcuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 159385 0.67 0.898932
Target:  5'- cGCGGGuCCCGCGgcgUCGGGGcggaagguCCGGUc -3'
miRNA:   3'- aCGCCCuGGGUGCa--GGUCUUu-------GGUCA- -5'
9375 5' -56.8 NC_002512.2 + 160780 0.66 0.941806
Target:  5'- aGCGGGGCCgGCGcagCAGcAGCCAc- -3'
miRNA:   3'- aCGCCCUGGgUGCag-GUCuUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 161478 0.68 0.850073
Target:  5'- gGCGGGAuccugcCCCACGUCaAGGagGACCuGGUg -3'
miRNA:   3'- aCGCCCU------GGGUGCAGgUCU--UUGG-UCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.