miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 5' -56.8 NC_002512.2 + 220416 0.69 0.800054
Target:  5'- cGCGGGcccgcccGCCUACGgCCAGccGCCGGa -3'
miRNA:   3'- aCGCCC-------UGGGUGCaGGUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 159002 0.69 0.800922
Target:  5'- gGCGGcGGCCCcgGCGUCCGc--GCCGGg -3'
miRNA:   3'- aCGCC-CUGGG--UGCAGGUcuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 148426 0.69 0.817959
Target:  5'- cUGCGGGACCgC-CGggggaggaCGGggGCCGGg -3'
miRNA:   3'- -ACGCCCUGG-GuGCag------GUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 157045 0.69 0.826243
Target:  5'- aGCGaGGACCCcggcaaggcggGCGUCCcGggGuCCGGg -3'
miRNA:   3'- aCGC-CCUGGG-----------UGCAGGuCuuU-GGUCa -5'
9375 5' -56.8 NC_002512.2 + 204721 0.69 0.826243
Target:  5'- gGCGGG-CCCGgGgCgGGggGCCGGa -3'
miRNA:   3'- aCGCCCuGGGUgCaGgUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 117825 0.69 0.833557
Target:  5'- cGCGGcgGACCgACGUCCuggacacGGAGGCCAu- -3'
miRNA:   3'- aCGCC--CUGGgUGCAGG-------UCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 177072 0.69 0.834361
Target:  5'- aGcCGGuGACCCGCGUCCGucAGCCc-- -3'
miRNA:   3'- aC-GCC-CUGGGUGCAGGUcuUUGGuca -5'
9375 5' -56.8 NC_002512.2 + 113209 0.69 0.842307
Target:  5'- aGCGGGAgCCGgGUCCucgcccggGGAGACgGGc -3'
miRNA:   3'- aCGCCCUgGGUgCAGG--------UCUUUGgUCa -5'
9375 5' -56.8 NC_002512.2 + 161478 0.68 0.850073
Target:  5'- gGCGGGAuccugcCCCACGUCaAGGagGACCuGGUg -3'
miRNA:   3'- aCGCCCU------GGGUGCAGgUCU--UUGG-UCA- -5'
9375 5' -56.8 NC_002512.2 + 91824 0.68 0.857653
Target:  5'- cUGCaGGACCUgacgcCGUCCGucGACCAGUc -3'
miRNA:   3'- -ACGcCCUGGGu----GCAGGUcuUUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 224929 0.68 0.857653
Target:  5'- cGCGGGGaCCGgGUCCGu--GCCGGUg -3'
miRNA:   3'- aCGCCCUgGGUgCAGGUcuuUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 226403 0.68 0.865041
Target:  5'- cGcCGGGACCCgucGCGUCCGcGucuCCGGa -3'
miRNA:   3'- aC-GCCCUGGG---UGCAGGU-CuuuGGUCa -5'
9375 5' -56.8 NC_002512.2 + 164492 0.68 0.865041
Target:  5'- -aCGaGGACuCCACGUCCcaggGGAAGCgCGGUa -3'
miRNA:   3'- acGC-CCUG-GGUGCAGG----UCUUUG-GUCA- -5'
9375 5' -56.8 NC_002512.2 + 94068 0.68 0.871523
Target:  5'- cGCGGGACCCuccuccccccgcgACGg-CGGcgGCCGGUc -3'
miRNA:   3'- aCGCCCUGGG-------------UGCagGUCuuUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 195341 0.68 0.872233
Target:  5'- gUGCGuGACCCgGCG-CCGGGAACCccgGGUg -3'
miRNA:   3'- -ACGCcCUGGG-UGCaGGUCUUUGG---UCA- -5'
9375 5' -56.8 NC_002512.2 + 199884 0.68 0.879222
Target:  5'- gGCGGcucGCCCugGUCUcGAGACCGc- -3'
miRNA:   3'- aCGCCc--UGGGugCAGGuCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 102040 0.67 0.886004
Target:  5'- -aCGGGAuCCCGC-UCCGGAcuCCGGa -3'
miRNA:   3'- acGCCCU-GGGUGcAGGUCUuuGGUCa -5'
9375 5' -56.8 NC_002512.2 + 108425 0.67 0.892576
Target:  5'- cUGCGccGCCCGgGgCCGGggGCCGGg -3'
miRNA:   3'- -ACGCccUGGGUgCaGGUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 148131 0.67 0.898932
Target:  5'- gGUGGuGACCCACGaCCAGcucauGAACaCGGa -3'
miRNA:   3'- aCGCC-CUGGGUGCaGGUC-----UUUG-GUCa -5'
9375 5' -56.8 NC_002512.2 + 72562 0.67 0.898932
Target:  5'- ---cGGACCCACGUCCgaaacgauaacGGAcgAACCGGa -3'
miRNA:   3'- acgcCCUGGGUGCAGG-----------UCU--UUGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.