miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 5' -56.8 NC_002512.2 + 161618 0.86 0.117027
Target:  5'- gGUGuGGGCCCACGUCCGGGAACUGGUu -3'
miRNA:   3'- aCGC-CCUGGGUGCAGGUCUUUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 128263 0.76 0.448409
Target:  5'- aGCGGcGACUCGCGUCCcGgcGCCGGg -3'
miRNA:   3'- aCGCC-CUGGGUGCAGGuCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 217921 0.75 0.493814
Target:  5'- aGaCGGuGGCCCGCGUCUucguGGGGACCGGg -3'
miRNA:   3'- aC-GCC-CUGGGUGCAGG----UCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 100113 0.75 0.50315
Target:  5'- --aGGGGCCgACGUCCAGGuccucuaggcgGACCAGg -3'
miRNA:   3'- acgCCCUGGgUGCAGGUCU-----------UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 92647 0.75 0.522044
Target:  5'- cGcCGGGACCCGCGcggaUCCGGGAcggccgcccgcGCCGGg -3'
miRNA:   3'- aC-GCCCUGGGUGC----AGGUCUU-----------UGGUCa -5'
9375 5' -56.8 NC_002512.2 + 3386 0.74 0.531594
Target:  5'- cGCGGGGCCCACaGguccCCAGAgGACCAc- -3'
miRNA:   3'- aCGCCCUGGGUG-Ca---GGUCU-UUGGUca -5'
9375 5' -56.8 NC_002512.2 + 185217 0.74 0.570369
Target:  5'- cGCGGuGGCCCGCGUCguGGAACg--- -3'
miRNA:   3'- aCGCC-CUGGGUGCAGguCUUUGguca -5'
9375 5' -56.8 NC_002512.2 + 162229 0.73 0.580179
Target:  5'- cGaCGGucgaGCCCGCGUCCGGggGCCcGUg -3'
miRNA:   3'- aC-GCCc---UGGGUGCAGGUCuuUGGuCA- -5'
9375 5' -56.8 NC_002512.2 + 96757 0.72 0.639549
Target:  5'- aGCGGGGCCC-CGUCCGagcGgcGCCAu- -3'
miRNA:   3'- aCGCCCUGGGuGCAGGU---CuuUGGUca -5'
9375 5' -56.8 NC_002512.2 + 146870 0.71 0.698703
Target:  5'- cGCGGGGCCacuacCGcCCGGAGGcCCAGg -3'
miRNA:   3'- aCGCCCUGGgu---GCaGGUCUUU-GGUCa -5'
9375 5' -56.8 NC_002512.2 + 205300 0.71 0.727679
Target:  5'- aGCGGucCCCGCGUCgAcGGACCGGg -3'
miRNA:   3'- aCGCCcuGGGUGCAGgUcUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 191661 0.71 0.737194
Target:  5'- gGCGGaGACguCCGCGUCCcGggGCUGGg -3'
miRNA:   3'- aCGCC-CUG--GGUGCAGGuCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 190871 0.7 0.745684
Target:  5'- cUGCGGGGggcuuucCCCGCGUCgCGGGgcgaggcgAACCGGa -3'
miRNA:   3'- -ACGCCCU-------GGGUGCAG-GUCU--------UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 209085 0.7 0.746623
Target:  5'- gUGCGGGAgCCCgACGUCCGGGucgucACCc-- -3'
miRNA:   3'- -ACGCCCU-GGG-UGCAGGUCUu----UGGuca -5'
9375 5' -56.8 NC_002512.2 + 132016 0.7 0.752235
Target:  5'- gGgGGGACCUcgGCGgcgacgucgucggCCAGGGACCGGa -3'
miRNA:   3'- aCgCCCUGGG--UGCa------------GGUCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 150000 0.7 0.759662
Target:  5'- cGCGGGaACCCACGccggggcucucuuccUCCuccgaggacgaGGggGCCGGg -3'
miRNA:   3'- aCGCCC-UGGGUGC---------------AGG-----------UCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 209031 0.7 0.765189
Target:  5'- aGCGGGGCggCCGCGUCCcGGAGCg--- -3'
miRNA:   3'- aCGCCCUG--GGUGCAGGuCUUUGguca -5'
9375 5' -56.8 NC_002512.2 + 149141 0.7 0.774309
Target:  5'- -cCGGGACCCGgGaccgCCGcGggGCCGGUg -3'
miRNA:   3'- acGCCCUGGGUgCa---GGU-CuuUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 224131 0.7 0.78331
Target:  5'- gGcCGuGGACCCGCG-CCGGGAGgCGGa -3'
miRNA:   3'- aC-GC-CCUGGGUGCaGGUCUUUgGUCa -5'
9375 5' -56.8 NC_002512.2 + 113583 0.7 0.792184
Target:  5'- cGCGGGugaCCGCGuUCCGGuaggagacgugGAGCCAGa -3'
miRNA:   3'- aCGCCCug-GGUGC-AGGUC-----------UUUGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.