miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 5' -56.8 NC_002512.2 + 166620 0.66 0.946159
Target:  5'- --aGGGcUCCGCGUCCGGGAACg--- -3'
miRNA:   3'- acgCCCuGGGUGCAGGUCUUUGguca -5'
9375 5' -56.8 NC_002512.2 + 216211 0.66 0.922159
Target:  5'- cGCGGccgucGCCU-CGUCCGGGAGCUGGa -3'
miRNA:   3'- aCGCCc----UGGGuGCAGGUCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 145615 0.66 0.925857
Target:  5'- gGCGGGcguucgGCCCgcugcccgccuuccGCGUCgAGAuGCCGGg -3'
miRNA:   3'- aCGCCC------UGGG--------------UGCAGgUCUuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 133599 0.66 0.926376
Target:  5'- gGCGGcGGCCCGCGgcagCCcccccgccuGCCGGUg -3'
miRNA:   3'- aCGCC-CUGGGUGCa---GGucuu-----UGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 134608 0.66 0.926893
Target:  5'- cGaCGGGAacccgacCCCGcCGUUCAGGAGCCGc- -3'
miRNA:   3'- aC-GCCCU-------GGGU-GCAGGUCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 217871 0.66 0.927408
Target:  5'- cGUGGGGagCGCGUCC-GAGAUCGGc -3'
miRNA:   3'- aCGCCCUggGUGCAGGuCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 212585 0.66 0.927408
Target:  5'- gGCGGcGACgacgCgAUGUCCGGAGACgAGg -3'
miRNA:   3'- aCGCC-CUG----GgUGCAGGUCUUUGgUCa -5'
9375 5' -56.8 NC_002512.2 + 206134 0.66 0.932431
Target:  5'- aGCGGG----GCGUCCGGucGCCAGa -3'
miRNA:   3'- aCGCCCugggUGCAGGUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 151070 0.66 0.93676
Target:  5'- gGCGGGGgaugcggucucggUCCGCG-CCGGAGACguGc -3'
miRNA:   3'- aCGCCCU-------------GGGUGCaGGUCUUUGguCa -5'
9375 5' -56.8 NC_002512.2 + 220205 0.66 0.93723
Target:  5'- cGcCGGGGCCCgACGgcggCCcgGGGGACgAGUg -3'
miRNA:   3'- aC-GCCCUGGG-UGCa---GG--UCUUUGgUCA- -5'
9375 5' -56.8 NC_002512.2 + 132414 0.66 0.93723
Target:  5'- gGgGGGAUcgaCCGCGgcgaUCCAGA-ACCGGUu -3'
miRNA:   3'- aCgCCCUG---GGUGC----AGGUCUuUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 107084 0.66 0.93723
Target:  5'- cGUagGGGACCCGcCG-CCAGGGcCCGGc -3'
miRNA:   3'- aCG--CCCUGGGU-GCaGGUCUUuGGUCa -5'
9375 5' -56.8 NC_002512.2 + 147449 0.66 0.941358
Target:  5'- aGCGGGACCgACGcccccucguccccUCCGccgcGGGACCAc- -3'
miRNA:   3'- aCGCCCUGGgUGC-------------AGGU----CUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 160780 0.66 0.941806
Target:  5'- aGCGGGGCCgGCGcagCAGcAGCCAc- -3'
miRNA:   3'- aCGCCCUGGgUGCag-GUCuUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 204964 0.66 0.941806
Target:  5'- cUGCGGGccgagcccgACgCCGCGggcgaCGGGGACCGGa -3'
miRNA:   3'- -ACGCCC---------UG-GGUGCag---GUCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 173394 0.66 0.941806
Target:  5'- -aCGGGACCguCGUCCugcGGGACCu-- -3'
miRNA:   3'- acGCCCUGGguGCAGGu--CUUUGGuca -5'
9375 5' -56.8 NC_002512.2 + 113147 0.66 0.946159
Target:  5'- cGCGGGGCgccggccucgCCGCGgCCGGGcgggacgcGACCGGc -3'
miRNA:   3'- aCGCCCUG----------GGUGCaGGUCU--------UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 204803 0.66 0.946159
Target:  5'- -cCGGGAggUCCGCGUCcCGGggGCgCGGc -3'
miRNA:   3'- acGCCCU--GGGUGCAG-GUCuuUG-GUCa -5'
9375 5' -56.8 NC_002512.2 + 226434 0.67 0.916687
Target:  5'- cGCGGGACCUuCGUCgccguCAccGACCAGc -3'
miRNA:   3'- aCGCCCUGGGuGCAG-----GUcuUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 214904 0.67 0.916687
Target:  5'- cUGCGGGACUuucugCGCGUCCAccGcgGCCGc- -3'
miRNA:   3'- -ACGCCCUGG-----GUGCAGGU--CuuUGGUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.