miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 5' -56.8 NC_002512.2 + 3386 0.74 0.531594
Target:  5'- cGCGGGGCCCACaGguccCCAGAgGACCAc- -3'
miRNA:   3'- aCGCCCUGGGUG-Ca---GGUCU-UUGGUca -5'
9375 5' -56.8 NC_002512.2 + 72562 0.67 0.898932
Target:  5'- ---cGGACCCACGUCCgaaacgauaacGGAcgAACCGGa -3'
miRNA:   3'- acgcCCUGGGUGCAGG-----------UCU--UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 90469 0.67 0.905071
Target:  5'- cUGCGGGuCCCcgaucaccgggGCGUCCucgacGGGAUCGGg -3'
miRNA:   3'- -ACGCCCuGGG-----------UGCAGGu----CUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 91824 0.68 0.857653
Target:  5'- cUGCaGGACCUgacgcCGUCCGucGACCAGUc -3'
miRNA:   3'- -ACGcCCUGGGu----GCAGGUcuUUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 92647 0.75 0.522044
Target:  5'- cGcCGGGACCCGCGcggaUCCGGGAcggccgcccgcGCCGGg -3'
miRNA:   3'- aC-GCCCUGGGUGC----AGGUCUU-----------UGGUCa -5'
9375 5' -56.8 NC_002512.2 + 94068 0.68 0.871523
Target:  5'- cGCGGGACCCuccuccccccgcgACGg-CGGcgGCCGGUc -3'
miRNA:   3'- aCGCCCUGGG-------------UGCagGUCuuUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 96757 0.72 0.639549
Target:  5'- aGCGGGGCCC-CGUCCGagcGgcGCCAu- -3'
miRNA:   3'- aCGCCCUGGGuGCAGGU---CuuUGGUca -5'
9375 5' -56.8 NC_002512.2 + 100113 0.75 0.50315
Target:  5'- --aGGGGCCgACGUCCAGGuccucuaggcgGACCAGg -3'
miRNA:   3'- acgCCCUGGgUGCAGGUCU-----------UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 101090 0.67 0.916687
Target:  5'- cGCGGa--CCACG-CCGGAGACcCAGa -3'
miRNA:   3'- aCGCCcugGGUGCaGGUCUUUG-GUCa -5'
9375 5' -56.8 NC_002512.2 + 102040 0.67 0.886004
Target:  5'- -aCGGGAuCCCGC-UCCGGAcuCCGGa -3'
miRNA:   3'- acGCCCU-GGGUGcAGGUCUuuGGUCa -5'
9375 5' -56.8 NC_002512.2 + 106309 0.67 0.905071
Target:  5'- cGCGGG-CCCGuCGUCCAGc--CCGu- -3'
miRNA:   3'- aCGCCCuGGGU-GCAGGUCuuuGGUca -5'
9375 5' -56.8 NC_002512.2 + 107084 0.66 0.93723
Target:  5'- cGUagGGGACCCGcCG-CCAGGGcCCGGc -3'
miRNA:   3'- aCG--CCCUGGGU-GCaGGUCUUuGGUCa -5'
9375 5' -56.8 NC_002512.2 + 108425 0.67 0.892576
Target:  5'- cUGCGccGCCCGgGgCCGGggGCCGGg -3'
miRNA:   3'- -ACGCccUGGGUgCaGGUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 113147 0.66 0.946159
Target:  5'- cGCGGGGCgccggccucgCCGCGgCCGGGcgggacgcGACCGGc -3'
miRNA:   3'- aCGCCCUG----------GGUGCaGGUCU--------UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 113209 0.69 0.842307
Target:  5'- aGCGGGAgCCGgGUCCucgcccggGGAGACgGGc -3'
miRNA:   3'- aCGCCCUgGGUgCAGG--------UCUUUGgUCa -5'
9375 5' -56.8 NC_002512.2 + 113583 0.7 0.792184
Target:  5'- cGCGGGugaCCGCGuUCCGGuaggagacgugGAGCCAGa -3'
miRNA:   3'- aCGCCCug-GGUGC-AGGUC-----------UUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 117825 0.69 0.833557
Target:  5'- cGCGGcgGACCgACGUCCuggacacGGAGGCCAu- -3'
miRNA:   3'- aCGCC--CUGGgUGCAGG-------UCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 124884 0.67 0.91099
Target:  5'- gGCGGcGGCCC-CGUCaCGGcGACCGu- -3'
miRNA:   3'- aCGCC-CUGGGuGCAG-GUCuUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 128263 0.76 0.448409
Target:  5'- aGCGGcGACUCGCGUCCcGgcGCCGGg -3'
miRNA:   3'- aCGCC-CUGGGUGCAGGuCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 128391 0.67 0.905071
Target:  5'- gGCGGcgGACCC-CGUCUcGAGcCCGGUg -3'
miRNA:   3'- aCGCC--CUGGGuGCAGGuCUUuGGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.