miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 5' -56.8 NC_002512.2 + 226434 0.67 0.916687
Target:  5'- cGCGGGACCUuCGUCgccguCAccGACCAGc -3'
miRNA:   3'- aCGCCCUGGGuGCAG-----GUcuUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 226403 0.68 0.865041
Target:  5'- cGcCGGGACCCgucGCGUCCGcGucuCCGGa -3'
miRNA:   3'- aC-GCCCUGGG---UGCAGGU-CuuuGGUCa -5'
9375 5' -56.8 NC_002512.2 + 224929 0.68 0.857653
Target:  5'- cGCGGGGaCCGgGUCCGu--GCCGGUg -3'
miRNA:   3'- aCGCCCUgGGUgCAGGUcuuUGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 224131 0.7 0.78331
Target:  5'- gGcCGuGGACCCGCG-CCGGGAGgCGGa -3'
miRNA:   3'- aC-GC-CCUGGGUGCaGGUCUUUgGUCa -5'
9375 5' -56.8 NC_002512.2 + 220416 0.69 0.800054
Target:  5'- cGCGGGcccgcccGCCUACGgCCAGccGCCGGa -3'
miRNA:   3'- aCGCCC-------UGGGUGCaGGUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 220205 0.66 0.93723
Target:  5'- cGcCGGGGCCCgACGgcggCCcgGGGGACgAGUg -3'
miRNA:   3'- aC-GCCCUGGG-UGCa---GG--UCUUUGgUCA- -5'
9375 5' -56.8 NC_002512.2 + 218493 0.67 0.91099
Target:  5'- cGCGGGucgUCCGCGUCCG--AGCCGu- -3'
miRNA:   3'- aCGCCCu--GGGUGCAGGUcuUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 217921 0.75 0.493814
Target:  5'- aGaCGGuGGCCCGCGUCUucguGGGGACCGGg -3'
miRNA:   3'- aC-GCC-CUGGGUGCAGG----UCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 217871 0.66 0.927408
Target:  5'- cGUGGGGagCGCGUCC-GAGAUCGGc -3'
miRNA:   3'- aCGCCCUggGUGCAGGuCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 216211 0.66 0.922159
Target:  5'- cGCGGccgucGCCU-CGUCCGGGAGCUGGa -3'
miRNA:   3'- aCGCCc----UGGGuGCAGGUCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 214904 0.67 0.916687
Target:  5'- cUGCGGGACUuucugCGCGUCCAccGcgGCCGc- -3'
miRNA:   3'- -ACGCCCUGG-----GUGCAGGU--CuuUGGUca -5'
9375 5' -56.8 NC_002512.2 + 212585 0.66 0.927408
Target:  5'- gGCGGcGACgacgCgAUGUCCGGAGACgAGg -3'
miRNA:   3'- aCGCC-CUG----GgUGCAGGUCUUUGgUCa -5'
9375 5' -56.8 NC_002512.2 + 211926 0.67 0.916127
Target:  5'- cGuCGGGACCCcgacgggACGUCCGuGGACgAGa -3'
miRNA:   3'- aC-GCCCUGGG-------UGCAGGUcUUUGgUCa -5'
9375 5' -56.8 NC_002512.2 + 209085 0.7 0.746623
Target:  5'- gUGCGGGAgCCCgACGUCCGGGucgucACCc-- -3'
miRNA:   3'- -ACGCCCU-GGG-UGCAGGUCUu----UGGuca -5'
9375 5' -56.8 NC_002512.2 + 209031 0.7 0.765189
Target:  5'- aGCGGGGCggCCGCGUCCcGGAGCg--- -3'
miRNA:   3'- aCGCCCUG--GGUGCAGGuCUUUGguca -5'
9375 5' -56.8 NC_002512.2 + 206134 0.66 0.932431
Target:  5'- aGCGGG----GCGUCCGGucGCCAGa -3'
miRNA:   3'- aCGCCCugggUGCAGGUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 205300 0.71 0.727679
Target:  5'- aGCGGucCCCGCGUCgAcGGACCGGg -3'
miRNA:   3'- aCGCCcuGGGUGCAGgUcUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 204964 0.66 0.941806
Target:  5'- cUGCGGGccgagcccgACgCCGCGggcgaCGGGGACCGGa -3'
miRNA:   3'- -ACGCCC---------UG-GGUGCag---GUCUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 204803 0.66 0.946159
Target:  5'- -cCGGGAggUCCGCGUCcCGGggGCgCGGc -3'
miRNA:   3'- acGCCCU--GGGUGCAG-GUCuuUG-GUCa -5'
9375 5' -56.8 NC_002512.2 + 204721 0.69 0.826243
Target:  5'- gGCGGG-CCCGgGgCgGGggGCCGGa -3'
miRNA:   3'- aCGCCCuGGGUgCaGgUCuuUGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.