Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 151070 | 0.66 | 0.93676 |
Target: 5'- gGCGGGGgaugcggucucggUCCGCG-CCGGAGACguGc -3' miRNA: 3'- aCGCCCU-------------GGGUGCaGGUCUUUGguCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 161618 | 0.86 | 0.117027 |
Target: 5'- gGUGuGGGCCCACGUCCGGGAACUGGUu -3' miRNA: 3'- aCGC-CCUGGGUGCAGGUCUUUGGUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 214904 | 0.67 | 0.916687 |
Target: 5'- cUGCGGGACUuucugCGCGUCCAccGcgGCCGc- -3' miRNA: 3'- -ACGCCCUGG-----GUGCAGGU--CuuUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 226434 | 0.67 | 0.916687 |
Target: 5'- cGCGGGACCUuCGUCgccguCAccGACCAGc -3' miRNA: 3'- aCGCCCUGGGuGCAG-----GUcuUUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 216211 | 0.66 | 0.922159 |
Target: 5'- cGCGGccgucGCCU-CGUCCGGGAGCUGGa -3' miRNA: 3'- aCGCCc----UGGGuGCAGGUCUUUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 145615 | 0.66 | 0.925857 |
Target: 5'- gGCGGGcguucgGCCCgcugcccgccuuccGCGUCgAGAuGCCGGg -3' miRNA: 3'- aCGCCC------UGGG--------------UGCAGgUCUuUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 133599 | 0.66 | 0.926376 |
Target: 5'- gGCGGcGGCCCGCGgcagCCcccccgccuGCCGGUg -3' miRNA: 3'- aCGCC-CUGGGUGCa---GGucuu-----UGGUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 134608 | 0.66 | 0.926893 |
Target: 5'- cGaCGGGAacccgacCCCGcCGUUCAGGAGCCGc- -3' miRNA: 3'- aC-GCCCU-------GGGU-GCAGGUCUUUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 217871 | 0.66 | 0.927408 |
Target: 5'- cGUGGGGagCGCGUCC-GAGAUCGGc -3' miRNA: 3'- aCGCCCUggGUGCAGGuCUUUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 212585 | 0.66 | 0.927408 |
Target: 5'- gGCGGcGACgacgCgAUGUCCGGAGACgAGg -3' miRNA: 3'- aCGCC-CUG----GgUGCAGGUCUUUGgUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 206134 | 0.66 | 0.932431 |
Target: 5'- aGCGGG----GCGUCCGGucGCCAGa -3' miRNA: 3'- aCGCCCugggUGCAGGUCuuUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 204803 | 0.66 | 0.946159 |
Target: 5'- -cCGGGAggUCCGCGUCcCGGggGCgCGGc -3' miRNA: 3'- acGCCCU--GGGUGCAG-GUCuuUG-GUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 220205 | 0.66 | 0.93723 |
Target: 5'- cGcCGGGGCCCgACGgcggCCcgGGGGACgAGUg -3' miRNA: 3'- aC-GCCCUGGG-UGCa---GG--UCUUUGgUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 132414 | 0.66 | 0.93723 |
Target: 5'- gGgGGGAUcgaCCGCGgcgaUCCAGA-ACCGGUu -3' miRNA: 3'- aCgCCCUG---GGUGC----AGGUCUuUGGUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 107084 | 0.66 | 0.93723 |
Target: 5'- cGUagGGGACCCGcCG-CCAGGGcCCGGc -3' miRNA: 3'- aCG--CCCUGGGU-GCaGGUCUUuGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 147449 | 0.66 | 0.941358 |
Target: 5'- aGCGGGACCgACGcccccucguccccUCCGccgcGGGACCAc- -3' miRNA: 3'- aCGCCCUGGgUGC-------------AGGU----CUUUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 160780 | 0.66 | 0.941806 |
Target: 5'- aGCGGGGCCgGCGcagCAGcAGCCAc- -3' miRNA: 3'- aCGCCCUGGgUGCag-GUCuUUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 204964 | 0.66 | 0.941806 |
Target: 5'- cUGCGGGccgagcccgACgCCGCGggcgaCGGGGACCGGa -3' miRNA: 3'- -ACGCCC---------UG-GGUGCag---GUCUUUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 173394 | 0.66 | 0.941806 |
Target: 5'- -aCGGGACCguCGUCCugcGGGACCu-- -3' miRNA: 3'- acGCCCUGGguGCAGGu--CUUUGGuca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 113147 | 0.66 | 0.946159 |
Target: 5'- cGCGGGGCgccggccucgCCGCGgCCGGGcgggacgcGACCGGc -3' miRNA: 3'- aCGCCCUG----------GGUGCaGGUCU--------UUGGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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