miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9375 5' -56.8 NC_002512.2 + 174334 0.67 0.916687
Target:  5'- gGCGGGgguccgccgcGCCCuCGUCCgccGGGAugCGGa -3'
miRNA:   3'- aCGCCC----------UGGGuGCAGG---UCUUugGUCa -5'
9375 5' -56.8 NC_002512.2 + 214904 0.67 0.916687
Target:  5'- cUGCGGGACUuucugCGCGUCCAccGcgGCCGc- -3'
miRNA:   3'- -ACGCCCUGG-----GUGCAGGU--CuuUGGUca -5'
9375 5' -56.8 NC_002512.2 + 226434 0.67 0.916687
Target:  5'- cGCGGGACCUuCGUCgccguCAccGACCAGc -3'
miRNA:   3'- aCGCCCUGGGuGCAG-----GUcuUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 211926 0.67 0.916127
Target:  5'- cGuCGGGACCCcgacgggACGUCCGuGGACgAGa -3'
miRNA:   3'- aC-GCCCUGGG-------UGCAGGUcUUUGgUCa -5'
9375 5' -56.8 NC_002512.2 + 218493 0.67 0.91099
Target:  5'- cGCGGGucgUCCGCGUCCG--AGCCGu- -3'
miRNA:   3'- aCGCCCu--GGGUGCAGGUcuUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 167831 0.67 0.91099
Target:  5'- gGcCGaGGACCCcgcgcACGUCCGgGAGGCCAa- -3'
miRNA:   3'- aC-GC-CCUGGG-----UGCAGGU-CUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 124884 0.67 0.91099
Target:  5'- gGCGGcGGCCC-CGUCaCGGcGACCGu- -3'
miRNA:   3'- aCGCC-CUGGGuGCAG-GUCuUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 90469 0.67 0.905071
Target:  5'- cUGCGGGuCCCcgaucaccgggGCGUCCucgacGGGAUCGGg -3'
miRNA:   3'- -ACGCCCuGGG-----------UGCAGGu----CUUUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 149230 0.67 0.905071
Target:  5'- cGCGGGACCgACGgacCCGGc-GCCGc- -3'
miRNA:   3'- aCGCCCUGGgUGCa--GGUCuuUGGUca -5'
9375 5' -56.8 NC_002512.2 + 106309 0.67 0.905071
Target:  5'- cGCGGG-CCCGuCGUCCAGc--CCGu- -3'
miRNA:   3'- aCGCCCuGGGU-GCAGGUCuuuGGUca -5'
9375 5' -56.8 NC_002512.2 + 128391 0.67 0.905071
Target:  5'- gGCGGcgGACCC-CGUCUcGAGcCCGGUg -3'
miRNA:   3'- aCGCC--CUGGGuGCAGGuCUUuGGUCA- -5'
9375 5' -56.8 NC_002512.2 + 181025 0.67 0.905071
Target:  5'- --gGGaGGCCCGCGUCCugggcaGGAGGCCGc- -3'
miRNA:   3'- acgCC-CUGGGUGCAGG------UCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 129242 0.67 0.904467
Target:  5'- cGCGGGACUgcugCGCGgggcgaUCCAGGacuagggGACCGGg -3'
miRNA:   3'- aCGCCCUGG----GUGC------AGGUCU-------UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 159385 0.67 0.898932
Target:  5'- cGCGGGuCCCGCGgcgUCGGGGcggaagguCCGGUc -3'
miRNA:   3'- aCGCCCuGGGUGCa--GGUCUUu-------GGUCA- -5'
9375 5' -56.8 NC_002512.2 + 148131 0.67 0.898932
Target:  5'- gGUGGuGACCCACGaCCAGcucauGAACaCGGa -3'
miRNA:   3'- aCGCC-CUGGGUGCaGGUC-----UUUG-GUCa -5'
9375 5' -56.8 NC_002512.2 + 72562 0.67 0.898932
Target:  5'- ---cGGACCCACGUCCgaaacgauaacGGAcgAACCGGa -3'
miRNA:   3'- acgcCCUGGGUGCAGG-----------UCU--UUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 108425 0.67 0.892576
Target:  5'- cUGCGccGCCCGgGgCCGGggGCCGGg -3'
miRNA:   3'- -ACGCccUGGGUgCaGGUCuuUGGUCa -5'
9375 5' -56.8 NC_002512.2 + 102040 0.67 0.886004
Target:  5'- -aCGGGAuCCCGC-UCCGGAcuCCGGa -3'
miRNA:   3'- acGCCCU-GGGUGcAGGUCUuuGGUCa -5'
9375 5' -56.8 NC_002512.2 + 199884 0.68 0.879222
Target:  5'- gGCGGcucGCCCugGUCUcGAGACCGc- -3'
miRNA:   3'- aCGCCc--UGGGugCAGGuCUUUGGUca -5'
9375 5' -56.8 NC_002512.2 + 195341 0.68 0.872233
Target:  5'- gUGCGuGACCCgGCG-CCGGGAACCccgGGUg -3'
miRNA:   3'- -ACGCcCUGGG-UGCaGGUCUUUGG---UCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.