Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9375 | 5' | -56.8 | NC_002512.2 | + | 94068 | 0.68 | 0.871523 |
Target: 5'- cGCGGGACCCuccuccccccgcgACGg-CGGcgGCCGGUc -3' miRNA: 3'- aCGCCCUGGG-------------UGCagGUCuuUGGUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 164492 | 0.68 | 0.865041 |
Target: 5'- -aCGaGGACuCCACGUCCcaggGGAAGCgCGGUa -3' miRNA: 3'- acGC-CCUG-GGUGCAGG----UCUUUG-GUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 226403 | 0.68 | 0.865041 |
Target: 5'- cGcCGGGACCCgucGCGUCCGcGucuCCGGa -3' miRNA: 3'- aC-GCCCUGGG---UGCAGGU-CuuuGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 224929 | 0.68 | 0.857653 |
Target: 5'- cGCGGGGaCCGgGUCCGu--GCCGGUg -3' miRNA: 3'- aCGCCCUgGGUgCAGGUcuuUGGUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 91824 | 0.68 | 0.857653 |
Target: 5'- cUGCaGGACCUgacgcCGUCCGucGACCAGUc -3' miRNA: 3'- -ACGcCCUGGGu----GCAGGUcuUUGGUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 161478 | 0.68 | 0.850073 |
Target: 5'- gGCGGGAuccugcCCCACGUCaAGGagGACCuGGUg -3' miRNA: 3'- aCGCCCU------GGGUGCAGgUCU--UUGG-UCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 113209 | 0.69 | 0.842307 |
Target: 5'- aGCGGGAgCCGgGUCCucgcccggGGAGACgGGc -3' miRNA: 3'- aCGCCCUgGGUgCAGG--------UCUUUGgUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 177072 | 0.69 | 0.834361 |
Target: 5'- aGcCGGuGACCCGCGUCCGucAGCCc-- -3' miRNA: 3'- aC-GCC-CUGGGUGCAGGUcuUUGGuca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 117825 | 0.69 | 0.833557 |
Target: 5'- cGCGGcgGACCgACGUCCuggacacGGAGGCCAu- -3' miRNA: 3'- aCGCC--CUGGgUGCAGG-------UCUUUGGUca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 204721 | 0.69 | 0.826243 |
Target: 5'- gGCGGG-CCCGgGgCgGGggGCCGGa -3' miRNA: 3'- aCGCCCuGGGUgCaGgUCuuUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 157045 | 0.69 | 0.826243 |
Target: 5'- aGCGaGGACCCcggcaaggcggGCGUCCcGggGuCCGGg -3' miRNA: 3'- aCGC-CCUGGG-----------UGCAGGuCuuU-GGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 148426 | 0.69 | 0.817959 |
Target: 5'- cUGCGGGACCgC-CGggggaggaCGGggGCCGGg -3' miRNA: 3'- -ACGCCCUGG-GuGCag------GUCuuUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 159002 | 0.69 | 0.800922 |
Target: 5'- gGCGGcGGCCCcgGCGUCCGc--GCCGGg -3' miRNA: 3'- aCGCC-CUGGG--UGCAGGUcuuUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 220416 | 0.69 | 0.800054 |
Target: 5'- cGCGGGcccgcccGCCUACGgCCAGccGCCGGa -3' miRNA: 3'- aCGCCC-------UGGGUGCaGGUCuuUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 113583 | 0.7 | 0.792184 |
Target: 5'- cGCGGGugaCCGCGuUCCGGuaggagacgugGAGCCAGa -3' miRNA: 3'- aCGCCCug-GGUGC-AGGUC-----------UUUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 224131 | 0.7 | 0.78331 |
Target: 5'- gGcCGuGGACCCGCG-CCGGGAGgCGGa -3' miRNA: 3'- aC-GC-CCUGGGUGCaGGUCUUUgGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 149141 | 0.7 | 0.774309 |
Target: 5'- -cCGGGACCCGgGaccgCCGcGggGCCGGUg -3' miRNA: 3'- acGCCCUGGGUgCa---GGU-CuuUGGUCA- -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 209031 | 0.7 | 0.765189 |
Target: 5'- aGCGGGGCggCCGCGUCCcGGAGCg--- -3' miRNA: 3'- aCGCCCUG--GGUGCAGGuCUUUGguca -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 150000 | 0.7 | 0.759662 |
Target: 5'- cGCGGGaACCCACGccggggcucucuuccUCCuccgaggacgaGGggGCCGGg -3' miRNA: 3'- aCGCCC-UGGGUGC---------------AGG-----------UCuuUGGUCa -5' |
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9375 | 5' | -56.8 | NC_002512.2 | + | 132016 | 0.7 | 0.752235 |
Target: 5'- gGgGGGACCUcgGCGgcgacgucgucggCCAGGGACCGGa -3' miRNA: 3'- aCgCCCUGGG--UGCa------------GGUCUUUGGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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