Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9376 | 3' | -57.2 | NC_002512.2 | + | 94847 | 0.66 | 0.906577 |
Target: 5'- ---aGAGCGUGGCCGcGGCGagaUCCGu -3' miRNA: 3'- uguaCUCGCGUUGGC-CCGCga-AGGUu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 143738 | 0.66 | 0.906577 |
Target: 5'- cUcgGAG-GCGGCCGcGGCgucgGCUUCCAGg -3' miRNA: 3'- uGuaCUCgCGUUGGC-CCG----CGAAGGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 132092 | 0.66 | 0.893988 |
Target: 5'- aGCcgGAGCGCucgGACCGGG-GCUcgagggCCGc -3' miRNA: 3'- -UGuaCUCGCG---UUGGCCCgCGAa-----GGUu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 190945 | 0.66 | 0.893988 |
Target: 5'- gACccGGGCGCAcgCGGGCGCccgCCGc -3' miRNA: 3'- -UGuaCUCGCGUugGCCCGCGaa-GGUu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 117715 | 0.66 | 0.893988 |
Target: 5'- gGCggGuGCGCAGCgacaUGGGUGCgagggUCCAGg -3' miRNA: 3'- -UGuaCuCGCGUUG----GCCCGCGa----AGGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 107197 | 0.66 | 0.893988 |
Target: 5'- uGCAcGGGCacCAGCCGGGcCGCggCCGGg -3' miRNA: 3'- -UGUaCUCGc-GUUGGCCC-GCGaaGGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 108754 | 0.66 | 0.887359 |
Target: 5'- gGCAgu-GCGCGGCgCGGGCGa-UCCGg -3' miRNA: 3'- -UGUacuCGCGUUG-GCCCGCgaAGGUu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 128770 | 0.66 | 0.880511 |
Target: 5'- uGCGcGAGCGCAcgccgcGCCGcGCGCUggCCGGg -3' miRNA: 3'- -UGUaCUCGCGU------UGGCcCGCGAa-GGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 228132 | 0.66 | 0.880511 |
Target: 5'- uGC-UGGGCGCcgaCGGGCGCgagcucaggUCCAc -3' miRNA: 3'- -UGuACUCGCGuugGCCCGCGa--------AGGUu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 192118 | 0.67 | 0.872732 |
Target: 5'- cACggGAGCGaCAGCCGgcucagcuucuucGGCGCgggCCAGa -3' miRNA: 3'- -UGuaCUCGC-GUUGGC-------------CCGCGaa-GGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 101795 | 0.67 | 0.866178 |
Target: 5'- cGCGgcgGAGCGCuuCCGaGGagGCUUCCu- -3' miRNA: 3'- -UGUa--CUCGCGuuGGC-CCg-CGAAGGuu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 198544 | 0.67 | 0.866178 |
Target: 5'- uCGUGGuCGUAGCCggccaGGGCGCUgUCCAGg -3' miRNA: 3'- uGUACUcGCGUUGG-----CCCGCGA-AGGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 221440 | 0.67 | 0.843161 |
Target: 5'- uGCG-GAcCGCGGCCgGGGCGCggucgUCCGAc -3' miRNA: 3'- -UGUaCUcGCGUUGG-CCCGCGa----AGGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 225749 | 0.68 | 0.809905 |
Target: 5'- gUcgGGGCGCGGCCGGGacaugGgaUCCAu -3' miRNA: 3'- uGuaCUCGCGUUGGCCCg----CgaAGGUu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 73676 | 0.68 | 0.792308 |
Target: 5'- gACggGAGCGCGugCGGcauCGCUUUCGGg -3' miRNA: 3'- -UGuaCUCGCGUugGCCc--GCGAAGGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 209946 | 0.68 | 0.792308 |
Target: 5'- uCGUGcuGCuCGACCGGGCGCgggUCCu- -3' miRNA: 3'- uGUACu-CGcGUUGGCCCGCGa--AGGuu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 90935 | 0.69 | 0.783296 |
Target: 5'- ---cGGGCGCGACCggggcgugcguGGGCGCgacgaUCCAc -3' miRNA: 3'- uguaCUCGCGUUGG-----------CCCGCGa----AGGUu -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 111228 | 0.69 | 0.774151 |
Target: 5'- -gAUGAcGgGCGGCCGGGCGC--CCGGa -3' miRNA: 3'- ugUACU-CgCGUUGGCCCGCGaaGGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 45081 | 0.7 | 0.717007 |
Target: 5'- -aGUGAGCGUAacggccACCGGGuCGUgUCCGAu -3' miRNA: 3'- ugUACUCGCGU------UGGCCC-GCGaAGGUU- -5' |
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9376 | 3' | -57.2 | NC_002512.2 | + | 66384 | 0.7 | 0.697302 |
Target: 5'- uCGUGuGCGCAAUcgCGGGCGCUUUUu- -3' miRNA: 3'- uGUACuCGCGUUG--GCCCGCGAAGGuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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