miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9376 3' -57.2 NC_002512.2 + 143738 0.66 0.906577
Target:  5'- cUcgGAG-GCGGCCGcGGCgucgGCUUCCAGg -3'
miRNA:   3'- uGuaCUCgCGUUGGC-CCG----CGAAGGUU- -5'
9376 3' -57.2 NC_002512.2 + 94847 0.66 0.906577
Target:  5'- ---aGAGCGUGGCCGcGGCGagaUCCGu -3'
miRNA:   3'- uguaCUCGCGUUGGC-CCGCga-AGGUu -5'
9376 3' -57.2 NC_002512.2 + 107197 0.66 0.893988
Target:  5'- uGCAcGGGCacCAGCCGGGcCGCggCCGGg -3'
miRNA:   3'- -UGUaCUCGc-GUUGGCCC-GCGaaGGUU- -5'
9376 3' -57.2 NC_002512.2 + 117715 0.66 0.893988
Target:  5'- gGCggGuGCGCAGCgacaUGGGUGCgagggUCCAGg -3'
miRNA:   3'- -UGuaCuCGCGUUG----GCCCGCGa----AGGUU- -5'
9376 3' -57.2 NC_002512.2 + 190945 0.66 0.893988
Target:  5'- gACccGGGCGCAcgCGGGCGCccgCCGc -3'
miRNA:   3'- -UGuaCUCGCGUugGCCCGCGaa-GGUu -5'
9376 3' -57.2 NC_002512.2 + 132092 0.66 0.893988
Target:  5'- aGCcgGAGCGCucgGACCGGG-GCUcgagggCCGc -3'
miRNA:   3'- -UGuaCUCGCG---UUGGCCCgCGAa-----GGUu -5'
9376 3' -57.2 NC_002512.2 + 108754 0.66 0.887359
Target:  5'- gGCAgu-GCGCGGCgCGGGCGa-UCCGg -3'
miRNA:   3'- -UGUacuCGCGUUG-GCCCGCgaAGGUu -5'
9376 3' -57.2 NC_002512.2 + 128770 0.66 0.880511
Target:  5'- uGCGcGAGCGCAcgccgcGCCGcGCGCUggCCGGg -3'
miRNA:   3'- -UGUaCUCGCGU------UGGCcCGCGAa-GGUU- -5'
9376 3' -57.2 NC_002512.2 + 228132 0.66 0.880511
Target:  5'- uGC-UGGGCGCcgaCGGGCGCgagcucaggUCCAc -3'
miRNA:   3'- -UGuACUCGCGuugGCCCGCGa--------AGGUu -5'
9376 3' -57.2 NC_002512.2 + 192118 0.67 0.872732
Target:  5'- cACggGAGCGaCAGCCGgcucagcuucuucGGCGCgggCCAGa -3'
miRNA:   3'- -UGuaCUCGC-GUUGGC-------------CCGCGaa-GGUU- -5'
9376 3' -57.2 NC_002512.2 + 198544 0.67 0.866178
Target:  5'- uCGUGGuCGUAGCCggccaGGGCGCUgUCCAGg -3'
miRNA:   3'- uGUACUcGCGUUGG-----CCCGCGA-AGGUU- -5'
9376 3' -57.2 NC_002512.2 + 101795 0.67 0.866178
Target:  5'- cGCGgcgGAGCGCuuCCGaGGagGCUUCCu- -3'
miRNA:   3'- -UGUa--CUCGCGuuGGC-CCg-CGAAGGuu -5'
9376 3' -57.2 NC_002512.2 + 221440 0.67 0.843161
Target:  5'- uGCG-GAcCGCGGCCgGGGCGCggucgUCCGAc -3'
miRNA:   3'- -UGUaCUcGCGUUGG-CCCGCGa----AGGUU- -5'
9376 3' -57.2 NC_002512.2 + 225749 0.68 0.809905
Target:  5'- gUcgGGGCGCGGCCGGGacaugGgaUCCAu -3'
miRNA:   3'- uGuaCUCGCGUUGGCCCg----CgaAGGUu -5'
9376 3' -57.2 NC_002512.2 + 73676 0.68 0.792308
Target:  5'- gACggGAGCGCGugCGGcauCGCUUUCGGg -3'
miRNA:   3'- -UGuaCUCGCGUugGCCc--GCGAAGGUU- -5'
9376 3' -57.2 NC_002512.2 + 209946 0.68 0.792308
Target:  5'- uCGUGcuGCuCGACCGGGCGCgggUCCu- -3'
miRNA:   3'- uGUACu-CGcGUUGGCCCGCGa--AGGuu -5'
9376 3' -57.2 NC_002512.2 + 90935 0.69 0.783296
Target:  5'- ---cGGGCGCGACCggggcgugcguGGGCGCgacgaUCCAc -3'
miRNA:   3'- uguaCUCGCGUUGG-----------CCCGCGa----AGGUu -5'
9376 3' -57.2 NC_002512.2 + 111228 0.69 0.774151
Target:  5'- -gAUGAcGgGCGGCCGGGCGC--CCGGa -3'
miRNA:   3'- ugUACU-CgCGUUGGCCCGCGaaGGUU- -5'
9376 3' -57.2 NC_002512.2 + 45081 0.7 0.717007
Target:  5'- -aGUGAGCGUAacggccACCGGGuCGUgUCCGAu -3'
miRNA:   3'- ugUACUCGCGU------UGGCCC-GCGaAGGUU- -5'
9376 3' -57.2 NC_002512.2 + 66384 0.7 0.697302
Target:  5'- uCGUGuGCGCAAUcgCGGGCGCUUUUu- -3'
miRNA:   3'- uGUACuCGCGUUG--GCCCGCGAAGGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.