Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9376 | 3' | -57.2 | NC_002512.2 | + | 95674 | 0.71 | 0.657324 |
Target: 5'- uCGUGAGCGCGcguccGCCGGGC-CU-CCGg -3' miRNA: 3'- uGUACUCGCGU-----UGGCCCGcGAaGGUu -5' |
|||||||
9376 | 3' | -57.2 | NC_002512.2 | + | 120159 | 0.71 | 0.657324 |
Target: 5'- -----cGCGCAACCGGccGCGCUUCCc- -3' miRNA: 3'- uguacuCGCGUUGGCC--CGCGAAGGuu -5' |
|||||||
9376 | 3' | -57.2 | NC_002512.2 | + | 165642 | 0.72 | 0.596918 |
Target: 5'- uGCAUGAGCGCu-UCGGGgGcCUUCCc- -3' miRNA: 3'- -UGUACUCGCGuuGGCCCgC-GAAGGuu -5' |
|||||||
9376 | 3' | -57.2 | NC_002512.2 | + | 159150 | 0.73 | 0.547192 |
Target: 5'- -aGUGAG-GCGGCCGGGCGCgcUCCc- -3' miRNA: 3'- ugUACUCgCGUUGGCCCGCGa-AGGuu -5' |
|||||||
9376 | 3' | -57.2 | NC_002512.2 | + | 97762 | 0.74 | 0.489406 |
Target: 5'- cGCAaccGGCGCuACCGGGCGCUgccggCCGAg -3' miRNA: 3'- -UGUac-UCGCGuUGGCCCGCGAa----GGUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home