Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9376 | 5' | -53.9 | NC_002512.2 | + | 226689 | 0.66 | 0.989689 |
Target: 5'- cGCCGGGcCGUcgcCCGCGG-CGGcgUCGAg -3' miRNA: 3'- cUGGCUC-GCAu--GGUGCCaGCUa-AGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 153397 | 0.66 | 0.989689 |
Target: 5'- cGACgugGAGCGcgGCgGCGGUCGAgguggCGGa -3' miRNA: 3'- -CUGg--CUCGCa-UGgUGCCAGCUaa---GCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 105776 | 0.66 | 0.989689 |
Target: 5'- aACCuGGGCGU-CgCAUGGUCGAcggCGAg -3' miRNA: 3'- cUGG-CUCGCAuG-GUGCCAGCUaa-GCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 227429 | 0.66 | 0.989689 |
Target: 5'- cGCgCGGGCGcggGCCGCGGUCaccUUCGc -3' miRNA: 3'- cUG-GCUCGCa--UGGUGCCAGcu-AAGCu -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 89644 | 0.66 | 0.98687 |
Target: 5'- cGACgGGGCGgACgaaGCGGUCGAcguacUCGAc -3' miRNA: 3'- -CUGgCUCGCaUGg--UGCCAGCUa----AGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 188936 | 0.66 | 0.98687 |
Target: 5'- uGGCgGGGC--GCgGCGGUCGGUUCc- -3' miRNA: 3'- -CUGgCUCGcaUGgUGCCAGCUAAGcu -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 168993 | 0.66 | 0.985254 |
Target: 5'- cGACCGAGCGgucgcgcGCCGgcuCGG-CGAUcCGGg -3' miRNA: 3'- -CUGGCUCGCa------UGGU---GCCaGCUAaGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 78328 | 0.66 | 0.985254 |
Target: 5'- cGACCGucCGgACCGCGGaaGGUUCGu -3' miRNA: 3'- -CUGGCucGCaUGGUGCCagCUAAGCu -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 199575 | 0.66 | 0.983491 |
Target: 5'- aGACuCGuGCgGUACCGCGgGUCG--UCGAc -3' miRNA: 3'- -CUG-GCuCG-CAUGGUGC-CAGCuaAGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 193889 | 0.66 | 0.983491 |
Target: 5'- cGACgcggGAGCGggucGCCGCGGUCGg--CGGa -3' miRNA: 3'- -CUGg---CUCGCa---UGGUGCCAGCuaaGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 190004 | 0.67 | 0.981573 |
Target: 5'- cGACCucaAGUugGCCGCGGUCGAggcCGAc -3' miRNA: 3'- -CUGGc--UCGcaUGGUGCCAGCUaa-GCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 228079 | 0.67 | 0.981573 |
Target: 5'- aGACgaCGGGC-UGCaCACGGUCGGgagCGAg -3' miRNA: 3'- -CUG--GCUCGcAUG-GUGCCAGCUaa-GCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 225812 | 0.67 | 0.979493 |
Target: 5'- cGGCCGGGUG-GCCugGGaccUCGAgccgCGGg -3' miRNA: 3'- -CUGGCUCGCaUGGugCC---AGCUaa--GCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 32899 | 0.67 | 0.979493 |
Target: 5'- cGACaGGGCGaACUggGGcCGAUUCGAg -3' miRNA: 3'- -CUGgCUCGCaUGGugCCaGCUAAGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 74654 | 0.67 | 0.979493 |
Target: 5'- --aCGGGCGggacgGCCGCGGgcgCGuUUCGGu -3' miRNA: 3'- cugGCUCGCa----UGGUGCCa--GCuAAGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 90641 | 0.67 | 0.974817 |
Target: 5'- cGACCcGGCGccgcgGCCGCGGUCucgGAgUCGGc -3' miRNA: 3'- -CUGGcUCGCa----UGGUGCCAG---CUaAGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 100491 | 0.67 | 0.974817 |
Target: 5'- gGACCuuGgGgagGCCGCGGUCG--UCGAg -3' miRNA: 3'- -CUGGcuCgCa--UGGUGCCAGCuaAGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 133827 | 0.67 | 0.972207 |
Target: 5'- cGGCCGAGuCGUACCGcCGG-CGcUUCc- -3' miRNA: 3'- -CUGGCUC-GCAUGGU-GCCaGCuAAGcu -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 92542 | 0.68 | 0.969408 |
Target: 5'- cGGCCGcGGCG-GCCGCGG-CGAcgacgUCGGa -3' miRNA: 3'- -CUGGC-UCGCaUGGUGCCaGCUa----AGCU- -5' |
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9376 | 5' | -53.9 | NC_002512.2 | + | 157165 | 0.68 | 0.966413 |
Target: 5'- gGGCCGGGCGgcguggGCgGCGGcgCGAcgaUCGAc -3' miRNA: 3'- -CUGGCUCGCa-----UGgUGCCa-GCUa--AGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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