miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9376 5' -53.9 NC_002512.2 + 227429 0.66 0.989689
Target:  5'- cGCgCGGGCGcggGCCGCGGUCaccUUCGc -3'
miRNA:   3'- cUG-GCUCGCa--UGGUGCCAGcu-AAGCu -5'
9376 5' -53.9 NC_002512.2 + 226689 0.66 0.989689
Target:  5'- cGCCGGGcCGUcgcCCGCGG-CGGcgUCGAg -3'
miRNA:   3'- cUGGCUC-GCAu--GGUGCCaGCUa-AGCU- -5'
9376 5' -53.9 NC_002512.2 + 153397 0.66 0.989689
Target:  5'- cGACgugGAGCGcgGCgGCGGUCGAgguggCGGa -3'
miRNA:   3'- -CUGg--CUCGCa-UGgUGCCAGCUaa---GCU- -5'
9376 5' -53.9 NC_002512.2 + 105776 0.66 0.989689
Target:  5'- aACCuGGGCGU-CgCAUGGUCGAcggCGAg -3'
miRNA:   3'- cUGG-CUCGCAuG-GUGCCAGCUaa-GCU- -5'
9376 5' -53.9 NC_002512.2 + 188936 0.66 0.98687
Target:  5'- uGGCgGGGC--GCgGCGGUCGGUUCc- -3'
miRNA:   3'- -CUGgCUCGcaUGgUGCCAGCUAAGcu -5'
9376 5' -53.9 NC_002512.2 + 89644 0.66 0.98687
Target:  5'- cGACgGGGCGgACgaaGCGGUCGAcguacUCGAc -3'
miRNA:   3'- -CUGgCUCGCaUGg--UGCCAGCUa----AGCU- -5'
9376 5' -53.9 NC_002512.2 + 168993 0.66 0.985254
Target:  5'- cGACCGAGCGgucgcgcGCCGgcuCGG-CGAUcCGGg -3'
miRNA:   3'- -CUGGCUCGCa------UGGU---GCCaGCUAaGCU- -5'
9376 5' -53.9 NC_002512.2 + 78328 0.66 0.985254
Target:  5'- cGACCGucCGgACCGCGGaaGGUUCGu -3'
miRNA:   3'- -CUGGCucGCaUGGUGCCagCUAAGCu -5'
9376 5' -53.9 NC_002512.2 + 199575 0.66 0.983491
Target:  5'- aGACuCGuGCgGUACCGCGgGUCG--UCGAc -3'
miRNA:   3'- -CUG-GCuCG-CAUGGUGC-CAGCuaAGCU- -5'
9376 5' -53.9 NC_002512.2 + 193889 0.66 0.983491
Target:  5'- cGACgcggGAGCGggucGCCGCGGUCGg--CGGa -3'
miRNA:   3'- -CUGg---CUCGCa---UGGUGCCAGCuaaGCU- -5'
9376 5' -53.9 NC_002512.2 + 228079 0.67 0.981573
Target:  5'- aGACgaCGGGC-UGCaCACGGUCGGgagCGAg -3'
miRNA:   3'- -CUG--GCUCGcAUG-GUGCCAGCUaa-GCU- -5'
9376 5' -53.9 NC_002512.2 + 190004 0.67 0.981573
Target:  5'- cGACCucaAGUugGCCGCGGUCGAggcCGAc -3'
miRNA:   3'- -CUGGc--UCGcaUGGUGCCAGCUaa-GCU- -5'
9376 5' -53.9 NC_002512.2 + 225812 0.67 0.979493
Target:  5'- cGGCCGGGUG-GCCugGGaccUCGAgccgCGGg -3'
miRNA:   3'- -CUGGCUCGCaUGGugCC---AGCUaa--GCU- -5'
9376 5' -53.9 NC_002512.2 + 74654 0.67 0.979493
Target:  5'- --aCGGGCGggacgGCCGCGGgcgCGuUUCGGu -3'
miRNA:   3'- cugGCUCGCa----UGGUGCCa--GCuAAGCU- -5'
9376 5' -53.9 NC_002512.2 + 32899 0.67 0.979493
Target:  5'- cGACaGGGCGaACUggGGcCGAUUCGAg -3'
miRNA:   3'- -CUGgCUCGCaUGGugCCaGCUAAGCU- -5'
9376 5' -53.9 NC_002512.2 + 100491 0.67 0.974817
Target:  5'- gGACCuuGgGgagGCCGCGGUCG--UCGAg -3'
miRNA:   3'- -CUGGcuCgCa--UGGUGCCAGCuaAGCU- -5'
9376 5' -53.9 NC_002512.2 + 90641 0.67 0.974817
Target:  5'- cGACCcGGCGccgcgGCCGCGGUCucgGAgUCGGc -3'
miRNA:   3'- -CUGGcUCGCa----UGGUGCCAG---CUaAGCU- -5'
9376 5' -53.9 NC_002512.2 + 133827 0.67 0.972207
Target:  5'- cGGCCGAGuCGUACCGcCGG-CGcUUCc- -3'
miRNA:   3'- -CUGGCUC-GCAUGGU-GCCaGCuAAGcu -5'
9376 5' -53.9 NC_002512.2 + 92542 0.68 0.969408
Target:  5'- cGGCCGcGGCG-GCCGCGG-CGAcgacgUCGGa -3'
miRNA:   3'- -CUGGC-UCGCaUGGUGCCaGCUa----AGCU- -5'
9376 5' -53.9 NC_002512.2 + 157165 0.68 0.966413
Target:  5'- gGGCCGGGCGgcguggGCgGCGGcgCGAcgaUCGAc -3'
miRNA:   3'- -CUGGCUCGCa-----UGgUGCCa-GCUa--AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.