miRNA display CGI


Results 41 - 60 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9377 3' -47.9 NC_002512.2 + 99733 0.67 0.999885
Target:  5'- gGCCGGCccGCcgCCGGGCcccgcGGCCGCGa -3'
miRNA:   3'- -UGGCUGa-UGa-GGCUUGuuu--UUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 100580 0.67 0.999885
Target:  5'- cGCCGGgcGCUCgGGugGgGAAACCGCGc -3'
miRNA:   3'- -UGGCUgaUGAGgCUugU-UUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 148862 0.67 0.999885
Target:  5'- cGCCGGCUGCcgccUCCGccuGCGcAAGCUGCu -3'
miRNA:   3'- -UGGCUGAUG----AGGCu--UGUuUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 167771 0.67 0.999885
Target:  5'- gAUCGAgUACguccugaccugUCCGGACGAGAGCaagaaGCGg -3'
miRNA:   3'- -UGGCUgAUG-----------AGGCUUGUUUUUGg----UGC- -5'
9377 3' -47.9 NC_002512.2 + 209062 0.67 0.999885
Target:  5'- -aCGGCUcCUCCGAcgacgucuucguGCGGGAGCC-CGa -3'
miRNA:   3'- ugGCUGAuGAGGCU------------UGUUUUUGGuGC- -5'
9377 3' -47.9 NC_002512.2 + 223493 0.67 0.999885
Target:  5'- cGCCGccuccCUGC-CCGucGCGAcGACCACGg -3'
miRNA:   3'- -UGGCu----GAUGaGGCu-UGUUuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 122802 0.67 0.999851
Target:  5'- cGCCGACcgAC-CCGAccgcccccgagaACGAGAuggagGCCGCGa -3'
miRNA:   3'- -UGGCUGa-UGaGGCU------------UGUUUU-----UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 224911 0.67 0.999851
Target:  5'- cGCCGuCUGCaccUCCGucGCGGGGACCGgGu -3'
miRNA:   3'- -UGGCuGAUG---AGGCu-UGUUUUUGGUgC- -5'
9377 3' -47.9 NC_002512.2 + 152350 0.67 0.999851
Target:  5'- cACCG-CggacCUCCGAGCAcgGAGACCGg- -3'
miRNA:   3'- -UGGCuGau--GAGGCUUGU--UUUUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 149926 0.67 0.999851
Target:  5'- gGCCGACcGCuUCCGAcgGCAGgcGGACCcccGCGc -3'
miRNA:   3'- -UGGCUGaUG-AGGCU--UGUU--UUUGG---UGC- -5'
9377 3' -47.9 NC_002512.2 + 76528 0.67 0.99981
Target:  5'- uGCCGGCUGacgUUCUGAugAAGGAUC-CGa -3'
miRNA:   3'- -UGGCUGAU---GAGGCUugUUUUUGGuGC- -5'
9377 3' -47.9 NC_002512.2 + 116694 0.67 0.99981
Target:  5'- gGCCGACgccGCUCUgGAACAAcgcAGCCcCGg -3'
miRNA:   3'- -UGGCUGa--UGAGG-CUUGUUu--UUGGuGC- -5'
9377 3' -47.9 NC_002512.2 + 190276 0.67 0.99981
Target:  5'- uGCaCGACgucgGCUCCGAGCAc--ACCGa- -3'
miRNA:   3'- -UG-GCUGa---UGAGGCUUGUuuuUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 194406 0.67 0.99981
Target:  5'- gGCCGACgucguCUUCGAguACGAGAacGCCAUc -3'
miRNA:   3'- -UGGCUGau---GAGGCU--UGUUUU--UGGUGc -5'
9377 3' -47.9 NC_002512.2 + 92484 0.67 0.999795
Target:  5'- aGCCGGCUGCagcguuacaCGGACuuccuccgcuuccgGGAGACCGCGc -3'
miRNA:   3'- -UGGCUGAUGag-------GCUUG--------------UUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 191472 0.68 0.999758
Target:  5'- gGCCGAgUACgaggcgCCGGACAGc-GCgGCGa -3'
miRNA:   3'- -UGGCUgAUGa-----GGCUUGUUuuUGgUGC- -5'
9377 3' -47.9 NC_002512.2 + 108848 0.68 0.999752
Target:  5'- uCCGACgACUCCGAguccucgaccgucACGAAgGACCGgGg -3'
miRNA:   3'- uGGCUGaUGAGGCU-------------UGUUU-UUGGUgC- -5'
9377 3' -47.9 NC_002512.2 + 150935 0.68 0.999694
Target:  5'- aGCCgGACUuagGCUCCG-GCG---GCCGCGg -3'
miRNA:   3'- -UGG-CUGA---UGAGGCuUGUuuuUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 176270 0.68 0.999616
Target:  5'- cGCCGACgauccGCUUCGggUccAGGGCCugGa -3'
miRNA:   3'- -UGGCUGa----UGAGGCuuGu-UUUUGGugC- -5'
9377 3' -47.9 NC_002512.2 + 145359 0.68 0.999521
Target:  5'- cCCGACg---CCGGcuACGAGGGCUACGa -3'
miRNA:   3'- uGGCUGaugaGGCU--UGUUUUUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.