miRNA display CGI


Results 21 - 40 of 117 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9377 3' -47.9 NC_002512.2 + 111838 0.66 0.999961
Target:  5'- gUCGA--GC-CCGGGCAcgGGCCACGg -3'
miRNA:   3'- uGGCUgaUGaGGCUUGUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 136020 0.66 0.999961
Target:  5'- aACCGugagaacCUCgGAAgGGAGACCGCGa -3'
miRNA:   3'- -UGGCugau---GAGgCUUgUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 140971 0.66 0.999949
Target:  5'- cCCGaACUgcauguccGCUcCCGAACG--GACCGCGa -3'
miRNA:   3'- uGGC-UGA--------UGA-GGCUUGUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 147859 0.66 0.999949
Target:  5'- cGCCGGCgcgaccccgAC-CCGGGCGAcggcucGCCGCGa -3'
miRNA:   3'- -UGGCUGa--------UGaGGCUUGUUuu----UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 225111 0.66 0.999949
Target:  5'- aACCGGCgcaGCUCgaggCGcAGCAGuuGCCACa -3'
miRNA:   3'- -UGGCUGa--UGAG----GC-UUGUUuuUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 77093 0.66 0.999949
Target:  5'- cGCCG-CggacCUCCGAGaCGGAGGCCcgGCGg -3'
miRNA:   3'- -UGGCuGau--GAGGCUU-GUUUUUGG--UGC- -5'
9377 3' -47.9 NC_002512.2 + 92408 0.66 0.999949
Target:  5'- cCCG-CUGCuggaUCCGAucccCGAGGACCACc -3'
miRNA:   3'- uGGCuGAUG----AGGCUu---GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 109855 0.66 0.999949
Target:  5'- gACCGGCgugGCggCGGugGGGAccuACCGCGa -3'
miRNA:   3'- -UGGCUGa--UGagGCUugUUUU---UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 143710 0.66 0.999949
Target:  5'- gGCCGACcuccaGCUcCCGcAGCAGGgccucggaggcGGCCGCGg -3'
miRNA:   3'- -UGGCUGa----UGA-GGC-UUGUUU-----------UUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 213886 0.66 0.999947
Target:  5'- gGCCGACcuaucucguguucUGCUccCCGGGgGAGaucGACCGCGg -3'
miRNA:   3'- -UGGCUG-------------AUGA--GGCUUgUUU---UUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 227413 0.66 0.999947
Target:  5'- cCCGGacCUACUCucgcgcgCGGGCGcgGGCCGCGg -3'
miRNA:   3'- uGGCU--GAUGAG-------GCUUGUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 184634 0.67 0.999932
Target:  5'- cGCCGGCgg--CCGAcgGCGAGu-CCGCGg -3'
miRNA:   3'- -UGGCUGaugaGGCU--UGUUUuuGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 125115 0.67 0.999926
Target:  5'- cGCCGACgcGCcgUCCGAccgggacgacggcgACGAGGACgGCGa -3'
miRNA:   3'- -UGGCUGa-UG--AGGCU--------------UGUUUUUGgUGC- -5'
9377 3' -47.9 NC_002512.2 + 81962 0.67 0.999922
Target:  5'- cGCCGACgaagacgaaaacGCUaauaaacagugaaaCCGAACAGAGaACCACa -3'
miRNA:   3'- -UGGCUGa-----------UGA--------------GGCUUGUUUU-UGGUGc -5'
9377 3' -47.9 NC_002512.2 + 157362 0.67 0.999911
Target:  5'- cGCCGAgguccggGCcgCCGGGCAGGGACCggACGa -3'
miRNA:   3'- -UGGCUga-----UGa-GGCUUGUUUUUGG--UGC- -5'
9377 3' -47.9 NC_002512.2 + 59849 0.67 0.999911
Target:  5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3'
miRNA:   3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 151805 0.67 0.999911
Target:  5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3'
miRNA:   3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 151883 0.67 0.999911
Target:  5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3'
miRNA:   3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 151961 0.67 0.999911
Target:  5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3'
miRNA:   3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 209062 0.67 0.999885
Target:  5'- -aCGGCUcCUCCGAcgacgucuucguGCGGGAGCC-CGa -3'
miRNA:   3'- ugGCUGAuGAGGCU------------UGUUUUUGGuGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.