miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9377 3' -47.9 NC_002512.2 + 90161 0.69 0.998411
Target:  5'- cGCCacuGCUGCUCCuGGAUggGuuCCACGu -3'
miRNA:   3'- -UGGc--UGAUGAGG-CUUGuuUuuGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 91529 0.7 0.99773
Target:  5'- aGCCG-CUGgUCCuGGAgGAGGACCACc -3'
miRNA:   3'- -UGGCuGAUgAGG-CUUgUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 92408 0.66 0.999949
Target:  5'- cCCG-CUGCuggaUCCGAucccCGAGGACCACc -3'
miRNA:   3'- uGGCuGAUG----AGGCUu---GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 92484 0.67 0.999795
Target:  5'- aGCCGGCUGCagcguuacaCGGACuuccuccgcuuccgGGAGACCGCGc -3'
miRNA:   3'- -UGGCUGAUGag-------GCUUG--------------UUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 93050 0.69 0.998754
Target:  5'- -aCGGCUGCUgccccaggcgcuguaCCGGgacgagaGCGAGAGCCGCGc -3'
miRNA:   3'- ugGCUGAUGA---------------GGCU-------UGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 94563 0.66 0.999971
Target:  5'- gGCgCGGCUGacgCCGAccuCGGGGACCGCc -3'
miRNA:   3'- -UG-GCUGAUga-GGCUu--GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 99733 0.67 0.999885
Target:  5'- gGCCGGCccGCcgCCGGGCcccgcGGCCGCGa -3'
miRNA:   3'- -UGGCUGa-UGa-GGCUUGuuu--UUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 100580 0.67 0.999885
Target:  5'- cGCCGGgcGCUCgGGugGgGAAACCGCGc -3'
miRNA:   3'- -UGGCUgaUGAGgCUugU-UUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 103221 0.69 0.998681
Target:  5'- cGCuCGACgaUGCUCCucuuguccggGGACAGGGACCGCc -3'
miRNA:   3'- -UG-GCUG--AUGAGG----------CUUGUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 106155 0.66 0.999971
Target:  5'- cCCGACcccGCaggUCCGAGCAcagguccacccGGAACCGCu -3'
miRNA:   3'- uGGCUGa--UG---AGGCUUGU-----------UUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 106458 0.69 0.999269
Target:  5'- uCCGACUGCgcaCGGGCGgcGGGACCuCGa -3'
miRNA:   3'- uGGCUGAUGag-GCUUGU--UUUUGGuGC- -5'
9377 3' -47.9 NC_002512.2 + 107610 0.69 0.998681
Target:  5'- cGCUGACggGCUCCaGGACGucc-CCGCGg -3'
miRNA:   3'- -UGGCUGa-UGAGG-CUUGUuuuuGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 108848 0.68 0.999752
Target:  5'- uCCGACgACUCCGAguccucgaccgucACGAAgGACCGgGg -3'
miRNA:   3'- uGGCUGaUGAGGCU-------------UGUUU-UUGGUgC- -5'
9377 3' -47.9 NC_002512.2 + 109155 0.68 0.999407
Target:  5'- cCCGGCUGCUgaGGugAcgGAUCGCGa -3'
miRNA:   3'- uGGCUGAUGAggCUugUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 109712 0.79 0.841525
Target:  5'- gGCCGuGCUGaUCaCGGACGAGAGCCGCGa -3'
miRNA:   3'- -UGGC-UGAUgAG-GCUUGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 109855 0.66 0.999949
Target:  5'- gACCGGCgugGCggCGGugGGGAccuACCGCGa -3'
miRNA:   3'- -UGGCUGa--UGagGCUugUUUU---UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 111599 0.66 0.999961
Target:  5'- cCCGGauCUucCUCCGGACGAGGGCgGCc -3'
miRNA:   3'- uGGCU--GAu-GAGGCUUGUUUUUGgUGc -5'
9377 3' -47.9 NC_002512.2 + 111838 0.66 0.999961
Target:  5'- gUCGA--GC-CCGGGCAcgGGCCACGg -3'
miRNA:   3'- uGGCUgaUGaGGCUUGUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 113193 0.7 0.997307
Target:  5'- cGCCGuCcGCUCCGcgAGCGGGAGCCGgGu -3'
miRNA:   3'- -UGGCuGaUGAGGC--UUGUUUUUGGUgC- -5'
9377 3' -47.9 NC_002512.2 + 115228 0.66 0.999979
Target:  5'- gACCGAgaGCaUCCuGGACGAcccGACCACc -3'
miRNA:   3'- -UGGCUgaUG-AGG-CUUGUUu--UUGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.