miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9377 3' -47.9 NC_002512.2 + 5076 0.72 0.992158
Target:  5'- -gCGACguucgggACUCC--ACAGAGACCACGa -3'
miRNA:   3'- ugGCUGa------UGAGGcuUGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 7376 0.7 0.997307
Target:  5'- -aCGAUggaaacGCUCCGGACGAcGAUCGCGu -3'
miRNA:   3'- ugGCUGa-----UGAGGCUUGUUuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 35632 0.79 0.823649
Target:  5'- cGCCGAgUuggacguAUUCCGAACGGAGAUCACGa -3'
miRNA:   3'- -UGGCUgA-------UGAGGCUUGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 36540 0.72 0.992158
Target:  5'- gUCGACUGCUugUCGAcuCGGAGACCGCa -3'
miRNA:   3'- uGGCUGAUGA--GGCUu-GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 40531 0.66 0.999961
Target:  5'- aACCGGCgUAC-CgGGAUggGGguGCCACGa -3'
miRNA:   3'- -UGGCUG-AUGaGgCUUGuuUU--UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 59849 0.67 0.999911
Target:  5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3'
miRNA:   3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 63933 0.71 0.993182
Target:  5'- -aCGugUACUCCagGAACAaAAGACCugGc -3'
miRNA:   3'- ugGCugAUGAGG--CUUGU-UUUUGGugC- -5'
9377 3' -47.9 NC_002512.2 + 66537 0.66 0.999979
Target:  5'- uCCGACcACguaUCCGAA-GAGGACCACc -3'
miRNA:   3'- uGGCUGaUG---AGGCUUgUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 70230 0.69 0.99891
Target:  5'- cACCGGCU-CggugCCGGcgcucgucuGCGAGAAUCGCGg -3'
miRNA:   3'- -UGGCUGAuGa---GGCU---------UGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 72201 0.67 0.999885
Target:  5'- aGCCggauaGACUGCUCCGGccACGuc-GCCAUa -3'
miRNA:   3'- -UGG-----CUGAUGAGGCU--UGUuuuUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 74749 0.66 0.999961
Target:  5'- cACCGGCUugUuccCCGGACGAc--CCAgGa -3'
miRNA:   3'- -UGGCUGAugA---GGCUUGUUuuuGGUgC- -5'
9377 3' -47.9 NC_002512.2 + 75450 0.69 0.998411
Target:  5'- gUCGACgGCgCCGGACAAGGAuCCGCu -3'
miRNA:   3'- uGGCUGaUGaGGCUUGUUUUU-GGUGc -5'
9377 3' -47.9 NC_002512.2 + 75737 0.68 0.999394
Target:  5'- cGCCGAacgggagGCgaCCGAGCGcgcgucgGAGACCGCGg -3'
miRNA:   3'- -UGGCUga-----UGa-GGCUUGU-------UUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 75920 0.66 0.999979
Target:  5'- cGCCGGCgccgCCGGACcccgAAGAACC-CGa -3'
miRNA:   3'- -UGGCUGaugaGGCUUG----UUUUUGGuGC- -5'
9377 3' -47.9 NC_002512.2 + 76463 0.72 0.989745
Target:  5'- gGCCG-CUGCcguUCCGAcaguCGAGGACCugGg -3'
miRNA:   3'- -UGGCuGAUG---AGGCUu---GUUUUUGGugC- -5'
9377 3' -47.9 NC_002512.2 + 76528 0.67 0.99981
Target:  5'- uGCCGGCUGacgUUCUGAugAAGGAUC-CGa -3'
miRNA:   3'- -UGGCUGAU---GAGGCUugUUUUUGGuGC- -5'
9377 3' -47.9 NC_002512.2 + 77093 0.66 0.999949
Target:  5'- cGCCG-CggacCUCCGAGaCGGAGGCCcgGCGg -3'
miRNA:   3'- -UGGCuGau--GAGGCUU-GUUUUUGG--UGC- -5'
9377 3' -47.9 NC_002512.2 + 78297 0.69 0.998992
Target:  5'- gACCGugUcgucucguuuccgcgACUgCGAGCGAccguccGGACCGCGg -3'
miRNA:   3'- -UGGCugA---------------UGAgGCUUGUU------UUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 81962 0.67 0.999922
Target:  5'- cGCCGACgaagacgaaaacGCUaauaaacagugaaaCCGAACAGAGaACCACa -3'
miRNA:   3'- -UGGCUGa-----------UGA--------------GGCUUGUUUU-UGGUGc -5'
9377 3' -47.9 NC_002512.2 + 89812 0.69 0.999269
Target:  5'- cGCCGAUgACgCCGAgaggACGucGAGACCGCGc -3'
miRNA:   3'- -UGGCUGaUGaGGCU----UGU--UUUUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.