miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9377 3' -47.9 NC_002512.2 + 35632 0.79 0.823649
Target:  5'- cGCCGAgUuggacguAUUCCGAACGGAGAUCACGa -3'
miRNA:   3'- -UGGCUgA-------UGAGGCUUGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 147207 0.79 0.833118
Target:  5'- cGCCGACaGC-CCGAGCG-GGACCGCGa -3'
miRNA:   3'- -UGGCUGaUGaGGCUUGUuUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 214332 0.79 0.841525
Target:  5'- gGCCGACgACUCCGGccuccucaGCGAGAGCCAg- -3'
miRNA:   3'- -UGGCUGaUGAGGCU--------UGUUUUUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 109712 0.79 0.841525
Target:  5'- gGCCGuGCUGaUCaCGGACGAGAGCCGCGa -3'
miRNA:   3'- -UGGC-UGAUgAG-GCUUGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 222133 0.76 0.930536
Target:  5'- gGCCGACUaccgccccgGCUCCGccccCGAGGACCGCu -3'
miRNA:   3'- -UGGCUGA---------UGAGGCuu--GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 134081 0.76 0.930536
Target:  5'- cACCGGCUGCgCUGGGCGA--GCUACGa -3'
miRNA:   3'- -UGGCUGAUGaGGCUUGUUuuUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 161908 0.74 0.971132
Target:  5'- cGCCGGCccucCUCCG-GCGGAcGCCACGg -3'
miRNA:   3'- -UGGCUGau--GAGGCuUGUUUuUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 215686 0.74 0.971132
Target:  5'- cACCGGCUGCccuUCUGGuuCGGGGACCGCa -3'
miRNA:   3'- -UGGCUGAUG---AGGCUu-GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 169009 0.73 0.983213
Target:  5'- cGCCGGCUcgGCgaUCCGGGCGGGcguCCGCGa -3'
miRNA:   3'- -UGGCUGA--UG--AGGCUUGUUUuu-GGUGC- -5'
9377 3' -47.9 NC_002512.2 + 209481 0.73 0.985082
Target:  5'- cACCGGCUGCUCguCGccgucuacagcGGCGGGGACCGCu -3'
miRNA:   3'- -UGGCUGAUGAG--GC-----------UUGUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 209622 0.72 0.986787
Target:  5'- -aCGAcCUGCggCCGGACGAGGACgACGa -3'
miRNA:   3'- ugGCU-GAUGa-GGCUUGUUUUUGgUGC- -5'
9377 3' -47.9 NC_002512.2 + 175567 0.72 0.989745
Target:  5'- cACCGACUugUaCCGG-CGGGucACCACGu -3'
miRNA:   3'- -UGGCUGAugA-GGCUuGUUUu-UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 76463 0.72 0.989745
Target:  5'- gGCCG-CUGCcguUCCGAcaguCGAGGACCugGg -3'
miRNA:   3'- -UGGCuGAUG---AGGCUu---GUUUUUGGugC- -5'
9377 3' -47.9 NC_002512.2 + 212491 0.72 0.989745
Target:  5'- -aCGACgACUCCGAccucgggcuggACGcgGACCACGa -3'
miRNA:   3'- ugGCUGaUGAGGCU-----------UGUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 36540 0.72 0.992158
Target:  5'- gUCGACUGCUugUCGAcuCGGAGACCGCa -3'
miRNA:   3'- uGGCUGAUGA--GGCUu-GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 5076 0.72 0.992158
Target:  5'- -gCGACguucgggACUCC--ACAGAGACCACGa -3'
miRNA:   3'- ugGCUGa------UGAGGcuUGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 162155 0.72 0.992158
Target:  5'- gGCCGGC-ACgCCGAccGCGAAAgcgGCCGCGu -3'
miRNA:   3'- -UGGCUGaUGaGGCU--UGUUUU---UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 63933 0.71 0.993182
Target:  5'- -aCGugUACUCCagGAACAaAAGACCugGc -3'
miRNA:   3'- ugGCugAUGAGG--CUUGU-UUUUGGugC- -5'
9377 3' -47.9 NC_002512.2 + 189066 0.71 0.994097
Target:  5'- gGCCGGCggcGCUCuCGAcgGCGAGucuCCGCGa -3'
miRNA:   3'- -UGGCUGa--UGAG-GCU--UGUUUuu-GGUGC- -5'
9377 3' -47.9 NC_002512.2 + 146298 0.71 0.99491
Target:  5'- -gCGACUGCUUCGAcaccgGCGuguacGGCCACGg -3'
miRNA:   3'- ugGCUGAUGAGGCU-----UGUuu---UUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.