miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9377 3' -47.9 NC_002512.2 + 124859 0.71 0.995629
Target:  5'- -gCGACgaggAC-CCGGACGAGAACCggGCGg -3'
miRNA:   3'- ugGCUGa---UGaGGCUUGUUUUUGG--UGC- -5'
9377 3' -47.9 NC_002512.2 + 217706 0.7 0.996264
Target:  5'- cGCCGGCgucgACgaggUCCGcuucaggggcGGCAGGGACCGCGa -3'
miRNA:   3'- -UGGCUGa---UG----AGGC----------UUGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 155579 0.7 0.996768
Target:  5'- cACCGAggacgucCUGucCUCCGu-CGAGGACCACGg -3'
miRNA:   3'- -UGGCU-------GAU--GAGGCuuGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 113193 0.7 0.997307
Target:  5'- cGCCGuCcGCUCCGcgAGCGGGAGCCGgGu -3'
miRNA:   3'- -UGGCuGaUGAGGC--UUGUUUUUGGUgC- -5'
9377 3' -47.9 NC_002512.2 + 7376 0.7 0.997307
Target:  5'- -aCGAUggaaacGCUCCGGACGAcGAUCGCGu -3'
miRNA:   3'- ugGCUGa-----UGAGGCUUGUUuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 184444 0.7 0.99773
Target:  5'- cGCCGGCg---UCGGACAGGGagucGCCGCGg -3'
miRNA:   3'- -UGGCUGaugaGGCUUGUUUU----UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 91529 0.7 0.99773
Target:  5'- aGCCG-CUGgUCCuGGAgGAGGACCACc -3'
miRNA:   3'- -UGGCuGAUgAGG-CUUgUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 219345 0.7 0.998096
Target:  5'- cGCCGGCUGC-CCG-GCGu---CCGCGa -3'
miRNA:   3'- -UGGCUGAUGaGGCuUGUuuuuGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 116171 0.7 0.998096
Target:  5'- cGCUGGCg---CCGGGCGAGuuCCACGc -3'
miRNA:   3'- -UGGCUGaugaGGCUUGUUUuuGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 90161 0.69 0.998411
Target:  5'- cGCCacuGCUGCUCCuGGAUggGuuCCACGu -3'
miRNA:   3'- -UGGc--UGAUGAGG-CUUGuuUuuGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 124952 0.69 0.998411
Target:  5'- cGCCGACg---CCGGACGAGGAggccgUCGCGg -3'
miRNA:   3'- -UGGCUGaugaGGCUUGUUUUU-----GGUGC- -5'
9377 3' -47.9 NC_002512.2 + 75450 0.69 0.998411
Target:  5'- gUCGACgGCgCCGGACAAGGAuCCGCu -3'
miRNA:   3'- uGGCUGaUGaGGCUUGUUUUU-GGUGc -5'
9377 3' -47.9 NC_002512.2 + 210914 0.69 0.998681
Target:  5'- cCCGGCU-CUCCG-GCAucaucGCCGCGa -3'
miRNA:   3'- uGGCUGAuGAGGCuUGUuuu--UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 107610 0.69 0.998681
Target:  5'- cGCUGACggGCUCCaGGACGucc-CCGCGg -3'
miRNA:   3'- -UGGCUGa-UGAGG-CUUGUuuuuGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 137529 0.69 0.998681
Target:  5'- uCCGGCUGCUCgcguccgcggCGAcggguucggucGCGGAAACCGCc -3'
miRNA:   3'- uGGCUGAUGAG----------GCU-----------UGUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 103221 0.69 0.998681
Target:  5'- cGCuCGACgaUGCUCCucuuguccggGGACAGGGACCGCc -3'
miRNA:   3'- -UG-GCUG--AUGAGG----------CUUGUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 93050 0.69 0.998754
Target:  5'- -aCGGCUGCUgccccaggcgcuguaCCGGgacgagaGCGAGAGCCGCGc -3'
miRNA:   3'- ugGCUGAUGA---------------GGCU-------UGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 158627 0.69 0.998845
Target:  5'- gGCCcugGACgGCUCCGAccccuucgaccccgACGucGAGGCCACGg -3'
miRNA:   3'- -UGG---CUGaUGAGGCU--------------UGU--UUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 70230 0.69 0.99891
Target:  5'- cACCGGCU-CggugCCGGcgcucgucuGCGAGAAUCGCGg -3'
miRNA:   3'- -UGGCUGAuGa---GGCU---------UGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 78297 0.69 0.998992
Target:  5'- gACCGugUcgucucguuuccgcgACUgCGAGCGAccguccGGACCGCGg -3'
miRNA:   3'- -UGGCugA---------------UGAgGCUUGUU------UUUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.