Results 21 - 40 of 117 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9377 | 3' | -47.9 | NC_002512.2 | + | 66537 | 0.66 | 0.999979 |
Target: 5'- uCCGACcACguaUCCGAA-GAGGACCACc -3' miRNA: 3'- uGGCUGaUG---AGGCUUgUUUUUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 136867 | 0.66 | 0.999979 |
Target: 5'- cACCaGCUGCagCUGAACAAGAAgaccgUCGCGg -3' miRNA: 3'- -UGGcUGAUGa-GGCUUGUUUUU-----GGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 128697 | 0.66 | 0.999979 |
Target: 5'- cGCCGGCg--UCuCGGACAAcaccauccuGAACCGCa -3' miRNA: 3'- -UGGCUGaugAG-GCUUGUU---------UUUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 75920 | 0.66 | 0.999979 |
Target: 5'- cGCCGGCgccgCCGGACcccgAAGAACC-CGa -3' miRNA: 3'- -UGGCUGaugaGGCUUG----UUUUUGGuGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 137914 | 0.66 | 0.999971 |
Target: 5'- gACgCGGCc-CUCCGGACGu--GCCGCu -3' miRNA: 3'- -UG-GCUGauGAGGCUUGUuuuUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 136020 | 0.66 | 0.999961 |
Target: 5'- aACCGugagaacCUCgGAAgGGAGACCGCGa -3' miRNA: 3'- -UGGCugau---GAGgCUUgUUUUUGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 134825 | 0.66 | 0.999971 |
Target: 5'- cCCaGCUGCUgCCGAcgGCGGAGGCCuACu -3' miRNA: 3'- uGGcUGAUGA-GGCU--UGUUUUUGG-UGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 224965 | 0.66 | 0.999971 |
Target: 5'- cGCCGuCUACccgCUGGGCGGcgGCgGCGg -3' miRNA: 3'- -UGGCuGAUGa--GGCUUGUUuuUGgUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 94563 | 0.66 | 0.999971 |
Target: 5'- gGCgCGGCUGacgCCGAccuCGGGGACCGCc -3' miRNA: 3'- -UG-GCUGAUga-GGCUu--GUUUUUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 122398 | 0.66 | 0.999971 |
Target: 5'- gACCG-CUGCgggCCGGucgcggcgACGAGAugaacaucGCCACGg -3' miRNA: 3'- -UGGCuGAUGa--GGCU--------UGUUUU--------UGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 106155 | 0.66 | 0.999971 |
Target: 5'- cCCGACcccGCaggUCCGAGCAcagguccacccGGAACCGCu -3' miRNA: 3'- uGGCUGa--UG---AGGCUUGU-----------UUUUGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 223493 | 0.67 | 0.999885 |
Target: 5'- cGCCGccuccCUGC-CCGucGCGAcGACCACGg -3' miRNA: 3'- -UGGCu----GAUGaGGCu-UGUUuUUGGUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 157362 | 0.67 | 0.999911 |
Target: 5'- cGCCGAgguccggGCcgCCGGGCAGGGACCggACGa -3' miRNA: 3'- -UGGCUga-----UGa-GGCUUGUUUUUGG--UGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 59849 | 0.67 | 0.999911 |
Target: 5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3' miRNA: 3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 151805 | 0.67 | 0.999911 |
Target: 5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3' miRNA: 3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 151883 | 0.67 | 0.999911 |
Target: 5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3' miRNA: 3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 151961 | 0.67 | 0.999911 |
Target: 5'- cACCGGgU-CUCCGugAACGGAGACCGg- -3' miRNA: 3'- -UGGCUgAuGAGGC--UUGUUUUUGGUgc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 81962 | 0.67 | 0.999922 |
Target: 5'- cGCCGACgaagacgaaaacGCUaauaaacagugaaaCCGAACAGAGaACCACa -3' miRNA: 3'- -UGGCUGa-----------UGA--------------GGCUUGUUUU-UGGUGc -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 125115 | 0.67 | 0.999926 |
Target: 5'- cGCCGACgcGCcgUCCGAccgggacgacggcgACGAGGACgGCGa -3' miRNA: 3'- -UGGCUGa-UG--AGGCU--------------UGUUUUUGgUGC- -5' |
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9377 | 3' | -47.9 | NC_002512.2 | + | 209062 | 0.67 | 0.999885 |
Target: 5'- -aCGGCUcCUCCGAcgacgucuucguGCGGGAGCC-CGa -3' miRNA: 3'- ugGCUGAuGAGGCU------------UGUUUUUGGuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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