miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9377 3' -47.9 NC_002512.2 + 227413 0.66 0.999947
Target:  5'- cCCGGacCUACUCucgcgcgCGGGCGcgGGCCGCGg -3'
miRNA:   3'- uGGCU--GAUGAG-------GCUUGUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 225111 0.66 0.999949
Target:  5'- aACCGGCgcaGCUCgaggCGcAGCAGuuGCCACa -3'
miRNA:   3'- -UGGCUGa--UGAG----GC-UUGUUuuUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 224965 0.66 0.999971
Target:  5'- cGCCGuCUACccgCUGGGCGGcgGCgGCGg -3'
miRNA:   3'- -UGGCuGAUGa--GGCUUGUUuuUGgUGC- -5'
9377 3' -47.9 NC_002512.2 + 224911 0.67 0.999851
Target:  5'- cGCCGuCUGCaccUCCGucGCGGGGACCGgGu -3'
miRNA:   3'- -UGGCuGAUG---AGGCu-UGUUUUUGGUgC- -5'
9377 3' -47.9 NC_002512.2 + 224616 0.68 0.999407
Target:  5'- uGCCGACcggGCUCgGggUcgccGCCGCGg -3'
miRNA:   3'- -UGGCUGa--UGAGgCuuGuuuuUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 223493 0.67 0.999885
Target:  5'- cGCCGccuccCUGC-CCGucGCGAcGACCACGg -3'
miRNA:   3'- -UGGCu----GAUGaGGCu-UGUUuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 222781 0.69 0.999269
Target:  5'- aGCaCGGCUACg-CGGACcAGGACCGCu -3'
miRNA:   3'- -UG-GCUGAUGagGCUUGuUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 222133 0.76 0.930536
Target:  5'- gGCCGACUaccgccccgGCUCCGccccCGAGGACCGCu -3'
miRNA:   3'- -UGGCUGA---------UGAGGCuu--GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 219345 0.7 0.998096
Target:  5'- cGCCGGCUGC-CCG-GCGu---CCGCGa -3'
miRNA:   3'- -UGGCUGAUGaGGCuUGUuuuuGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 217706 0.7 0.996264
Target:  5'- cGCCGGCgucgACgaggUCCGcuucaggggcGGCAGGGACCGCGa -3'
miRNA:   3'- -UGGCUGa---UG----AGGC----------UUGUUUUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 215686 0.74 0.971132
Target:  5'- cACCGGCUGCccuUCUGGuuCGGGGACCGCa -3'
miRNA:   3'- -UGGCUGAUG---AGGCUu-GUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 214332 0.79 0.841525
Target:  5'- gGCCGACgACUCCGGccuccucaGCGAGAGCCAg- -3'
miRNA:   3'- -UGGCUGaUGAGGCU--------UGUUUUUGGUgc -5'
9377 3' -47.9 NC_002512.2 + 213886 0.66 0.999947
Target:  5'- gGCCGACcuaucucguguucUGCUccCCGGGgGAGaucGACCGCGg -3'
miRNA:   3'- -UGGCUG-------------AUGA--GGCUUgUUU---UUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 212491 0.72 0.989745
Target:  5'- -aCGACgACUCCGAccucgggcuggACGcgGACCACGa -3'
miRNA:   3'- ugGCUGaUGAGGCU-----------UGUuuUUGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 210914 0.69 0.998681
Target:  5'- cCCGGCU-CUCCG-GCAucaucGCCGCGa -3'
miRNA:   3'- uGGCUGAuGAGGCuUGUuuu--UGGUGC- -5'
9377 3' -47.9 NC_002512.2 + 209622 0.72 0.986787
Target:  5'- -aCGAcCUGCggCCGGACGAGGACgACGa -3'
miRNA:   3'- ugGCU-GAUGa-GGCUUGUUUUUGgUGC- -5'
9377 3' -47.9 NC_002512.2 + 209481 0.73 0.985082
Target:  5'- cACCGGCUGCUCguCGccgucuacagcGGCGGGGACCGCu -3'
miRNA:   3'- -UGGCUGAUGAG--GC-----------UUGUUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 209062 0.67 0.999885
Target:  5'- -aCGGCUcCUCCGAcgacgucuucguGCGGGAGCC-CGa -3'
miRNA:   3'- ugGCUGAuGAGGCU------------UGUUUUUGGuGC- -5'
9377 3' -47.9 NC_002512.2 + 207740 0.68 0.999407
Target:  5'- gUCGGCgggggacGCUCCGGGguGGAGCCGCc -3'
miRNA:   3'- uGGCUGa------UGAGGCUUguUUUUGGUGc -5'
9377 3' -47.9 NC_002512.2 + 194785 0.69 0.999269
Target:  5'- -aCGGgaACUCCGAGCGGGAGCUg-- -3'
miRNA:   3'- ugGCUgaUGAGGCUUGUUUUUGGugc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.