miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9378 3' -55.1 NC_002512.2 + 44207 0.74 0.6403
Target:  5'- uGGAcgCGGGGGaCUGAUCGCCagaUCCg -3'
miRNA:   3'- -UCUuaGUUCCC-GGCUAGCGGgagAGG- -5'
9378 3' -55.1 NC_002512.2 + 218385 0.74 0.66026
Target:  5'- cGGG-CcAGGGCCucGUCGUCCUCUCCg -3'
miRNA:   3'- uCUUaGuUCCCGGc-UAGCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 143156 0.74 0.670212
Target:  5'- -aGAUCGAGGuCCGGUuggcCGCCCUCUCg -3'
miRNA:   3'- ucUUAGUUCCcGGCUA----GCGGGAGAGg -5'
9378 3' -55.1 NC_002512.2 + 171738 0.74 0.680134
Target:  5'- gGGAcGUCGagcucGGGGCCc-UCGCCCUCUCg -3'
miRNA:   3'- -UCU-UAGU-----UCCCGGcuAGCGGGAGAGg -5'
9378 3' -55.1 NC_002512.2 + 179810 0.73 0.719363
Target:  5'- cGggUCGAacagguaGGUCGGUC-CCCUCUCCg -3'
miRNA:   3'- uCuuAGUUc------CCGGCUAGcGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 174324 0.72 0.73763
Target:  5'- uGggUCAgcaggcgGGGGuCCGccgCGCCCUCgUCCg -3'
miRNA:   3'- uCuuAGU-------UCCC-GGCua-GCGGGAG-AGG- -5'
9378 3' -55.1 NC_002512.2 + 81807 0.72 0.757451
Target:  5'- ----aCGAGGGCCGAcgCGCCgCgaggUCUCCg -3'
miRNA:   3'- ucuuaGUUCCCGGCUa-GCGG-G----AGAGG- -5'
9378 3' -55.1 NC_002512.2 + 216429 0.72 0.76673
Target:  5'- gGGAcgCcAGGcucGCCGc-CGCCCUCUCCa -3'
miRNA:   3'- -UCUuaGuUCC---CGGCuaGCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 214773 0.71 0.79385
Target:  5'- -cAGUCcGGcGCCGGUCGCCCUCcgggUCCc -3'
miRNA:   3'- ucUUAGuUCcCGGCUAGCGGGAG----AGG- -5'
9378 3' -55.1 NC_002512.2 + 164262 0.71 0.811248
Target:  5'- gGGGGcCGucGGGUCGAUCGCCUcgggcuucgUCUCCu -3'
miRNA:   3'- -UCUUaGUu-CCCGGCUAGCGGG---------AGAGG- -5'
9378 3' -55.1 NC_002512.2 + 188925 0.71 0.828027
Target:  5'- gAGAGUCccgguggcGGGGCgcggCGGUCGguuCCCUCUCCc -3'
miRNA:   3'- -UCUUAGu-------UCCCG----GCUAGC---GGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 186524 0.7 0.833742
Target:  5'- cAGcGUCGaccucugcgugcacGGGGCCGA--GCCCUUUCCc -3'
miRNA:   3'- -UCuUAGU--------------UCCCGGCUagCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 118571 0.7 0.851904
Target:  5'- gGGAgcGUCGaaAGGGagccgCGAUCggcgGCCCUCUCCc -3'
miRNA:   3'- -UCU--UAGU--UCCCg----GCUAG----CGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 127644 0.7 0.866883
Target:  5'- aGGGAUCGGGucgcucggacGGCCGGUCGagggCCgCUCCg -3'
miRNA:   3'- -UCUUAGUUC----------CCGGCUAGCg---GGaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 96342 0.69 0.881058
Target:  5'- uGGAAgagCAcgcGGGGCgugaggCGAUCGUCCUCcCCg -3'
miRNA:   3'- -UCUUa--GU---UCCCG------GCUAGCGGGAGaGG- -5'
9378 3' -55.1 NC_002512.2 + 55061 0.69 0.881058
Target:  5'- gAGAGUCAucuGGGCgCGAccgcUCGCCCgaUUUCg -3'
miRNA:   3'- -UCUUAGUu--CCCG-GCU----AGCGGG--AGAGg -5'
9378 3' -55.1 NC_002512.2 + 135033 0.69 0.887832
Target:  5'- cAGGAUCGGGGGCCcGUCugacgcguacaGCCC-CUgCCu -3'
miRNA:   3'- -UCUUAGUUCCCGGcUAG-----------CGGGaGA-GG- -5'
9378 3' -55.1 NC_002512.2 + 216058 0.69 0.89439
Target:  5'- gGGcGUUcGGGGCCgGGUC-CUCUCUCCu -3'
miRNA:   3'- -UCuUAGuUCCCGG-CUAGcGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 225421 0.69 0.900729
Target:  5'- cGGggUCGgguuGGGGCCGA-CGCCgaCcCCc -3'
miRNA:   3'- -UCuuAGU----UCCCGGCUaGCGGgaGaGG- -5'
9378 3' -55.1 NC_002512.2 + 108435 0.69 0.900729
Target:  5'- cGGGGcCGGGGGCCGGgggGUCC-CUCCc -3'
miRNA:   3'- -UCUUaGUUCCCGGCUag-CGGGaGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.