miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9378 3' -55.1 NC_002512.2 + 44207 0.74 0.6403
Target:  5'- uGGAcgCGGGGGaCUGAUCGCCagaUCCg -3'
miRNA:   3'- -UCUuaGUUCCC-GGCUAGCGGgagAGG- -5'
9378 3' -55.1 NC_002512.2 + 55061 0.69 0.881058
Target:  5'- gAGAGUCAucuGGGCgCGAccgcUCGCCCgaUUUCg -3'
miRNA:   3'- -UCUUAGUu--CCCG-GCU----AGCGGG--AGAGg -5'
9378 3' -55.1 NC_002512.2 + 79234 0.68 0.92385
Target:  5'- gAGAA-CGAGaGGCCGucggccgcCGgCCUCUCCc -3'
miRNA:   3'- -UCUUaGUUC-CCGGCua------GCgGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 81807 0.72 0.757451
Target:  5'- ----aCGAGGGCCGAcgCGCCgCgaggUCUCCg -3'
miRNA:   3'- ucuuaGUUCCCGGCUa-GCGG-G----AGAGG- -5'
9378 3' -55.1 NC_002512.2 + 95154 0.66 0.976871
Target:  5'- cGggUCGAGGaCCGGa-GCCUUCcCCa -3'
miRNA:   3'- uCuuAGUUCCcGGCUagCGGGAGaGG- -5'
9378 3' -55.1 NC_002512.2 + 96342 0.69 0.881058
Target:  5'- uGGAAgagCAcgcGGGGCgugaggCGAUCGUCCUCcCCg -3'
miRNA:   3'- -UCUUa--GU---UCCCG------GCUAGCGGGAGaGG- -5'
9378 3' -55.1 NC_002512.2 + 102350 0.66 0.965912
Target:  5'- cGggUCcGGGcGUCGGUCGUCCggaggUCCu -3'
miRNA:   3'- uCuuAGuUCC-CGGCUAGCGGGag---AGG- -5'
9378 3' -55.1 NC_002512.2 + 102563 0.66 0.976633
Target:  5'- cGGcGUCGAuGGCCGAcuccagggucUCGCgcacgcguuuccuCCUCUCCu -3'
miRNA:   3'- -UCuUAGUUcCCGGCU----------AGCG-------------GGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 108435 0.69 0.900729
Target:  5'- cGGGGcCGGGGGCCGGgggGUCC-CUCCc -3'
miRNA:   3'- -UCUUaGUUCCCGGCUag-CGGGaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 111722 0.68 0.938806
Target:  5'- cGGAGUCuccggcGGGCaCGGUCGCCaugucgcggUUCCg -3'
miRNA:   3'- -UCUUAGuu----CCCG-GCUAGCGGga-------GAGG- -5'
9378 3' -55.1 NC_002512.2 + 113387 0.66 0.962682
Target:  5'- uGGAcCAGGGcGuuGcgCGCgCUCUCCc -3'
miRNA:   3'- uCUUaGUUCC-CggCuaGCGgGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 117885 0.68 0.92385
Target:  5'- cGGAcgcCGGGGGCCcGUCGCUg-CUCCa -3'
miRNA:   3'- -UCUua-GUUCCCGGcUAGCGGgaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 118571 0.7 0.851904
Target:  5'- gGGAgcGUCGaaAGGGagccgCGAUCggcgGCCCUCUCCc -3'
miRNA:   3'- -UCU--UAGU--UCCCg----GCUAG----CGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 127644 0.7 0.866883
Target:  5'- aGGGAUCGGGucgcucggacGGCCGGUCGagggCCgCUCCg -3'
miRNA:   3'- -UCUUAGUUC----------CCGGCUAGCg---GGaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 135033 0.69 0.887832
Target:  5'- cAGGAUCGGGGGCCcGUCugacgcguacaGCCC-CUgCCu -3'
miRNA:   3'- -UCUUAGUUCCCGGcUAG-----------CGGGaGA-GG- -5'
9378 3' -55.1 NC_002512.2 + 135137 0.66 0.971773
Target:  5'- ----cCGAGGGCCGGgcCGCCCUg--- -3'
miRNA:   3'- ucuuaGUUCCCGGCUa-GCGGGAgagg -5'
9378 3' -55.1 NC_002512.2 + 143156 0.74 0.670212
Target:  5'- -aGAUCGAGGuCCGGUuggcCGCCCUCUCg -3'
miRNA:   3'- ucUUAGUUCCcGGCUA----GCGGGAGAGg -5'
9378 3' -55.1 NC_002512.2 + 148673 0.67 0.959243
Target:  5'- cGAucCAGcGGGCCG-UgGCCCUCgucgCCg -3'
miRNA:   3'- uCUuaGUU-CCCGGCuAgCGGGAGa---GG- -5'
9378 3' -55.1 NC_002512.2 + 154922 0.66 0.968941
Target:  5'- gGGAAaCGuGGGCgGAcCGCUCUCgUCCc -3'
miRNA:   3'- -UCUUaGUuCCCGgCUaGCGGGAG-AGG- -5'
9378 3' -55.1 NC_002512.2 + 164262 0.71 0.811248
Target:  5'- gGGGGcCGucGGGUCGAUCGCCUcgggcuucgUCUCCu -3'
miRNA:   3'- -UCUUaGUu-CCCGGCUAGCGGG---------AGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.