miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9378 3' -55.1 NC_002512.2 + 228671 0.68 0.929063
Target:  5'- gGGAGgacGGGGCCGGggcCGCcuuCCUCUCUu -3'
miRNA:   3'- -UCUUaguUCCCGGCUa--GCG---GGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 225421 0.69 0.900729
Target:  5'- cGGggUCGgguuGGGGCCGA-CGCCgaCcCCc -3'
miRNA:   3'- -UCuuAGU----UCCCGGCUaGCGGgaGaGG- -5'
9378 3' -55.1 NC_002512.2 + 223021 0.66 0.976871
Target:  5'- aGGGAc---GGGUCG-UCGCCCaCUCCg -3'
miRNA:   3'- -UCUUaguuCCCGGCuAGCGGGaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 219885 0.66 0.965912
Target:  5'- cGGggUCgGAGacgaGCCGAcCGCCCUcCUCUc -3'
miRNA:   3'- -UCuuAG-UUCc---CGGCUaGCGGGA-GAGG- -5'
9378 3' -55.1 NC_002512.2 + 218385 0.74 0.66026
Target:  5'- cGGG-CcAGGGCCucGUCGUCCUCUCCg -3'
miRNA:   3'- uCUUaGuUCCCGGc-UAGCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 216429 0.72 0.76673
Target:  5'- gGGAcgCcAGGcucGCCGc-CGCCCUCUCCa -3'
miRNA:   3'- -UCUuaGuUCC---CGGCuaGCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 216058 0.69 0.89439
Target:  5'- gGGcGUUcGGGGCCgGGUC-CUCUCUCCu -3'
miRNA:   3'- -UCuUAGuUCCCGG-CUAGcGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 214773 0.71 0.79385
Target:  5'- -cAGUCcGGcGCCGGUCGCCCUCcgggUCCc -3'
miRNA:   3'- ucUUAGuUCcCGGCUAGCGGGAG----AGG- -5'
9378 3' -55.1 NC_002512.2 + 214636 0.67 0.951729
Target:  5'- gGGGA-CGcGGGCCGccUCGCaguCUCUCCu -3'
miRNA:   3'- -UCUUaGUuCCCGGCu-AGCGg--GAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 212933 0.66 0.968647
Target:  5'- -cGAUCGGGcGGCCcgguccgaGUCGCCCUacggcgcCUCCg -3'
miRNA:   3'- ucUUAGUUC-CCGGc-------UAGCGGGA-------GAGG- -5'
9378 3' -55.1 NC_002512.2 + 211974 0.67 0.947644
Target:  5'- --cGUCAGGacgcGGCCG-UCGUCCUCggggCCg -3'
miRNA:   3'- ucuUAGUUC----CCGGCuAGCGGGAGa---GG- -5'
9378 3' -55.1 NC_002512.2 + 209901 0.68 0.938806
Target:  5'- gGGAG-CAGGGGCUcAUCGUCgUCUgCa -3'
miRNA:   3'- -UCUUaGUUCCCGGcUAGCGGgAGAgG- -5'
9378 3' -55.1 NC_002512.2 + 208023 0.67 0.959243
Target:  5'- uAGAGUC-GGGGCgGAgacccUgGCCCgggugguuuUCUCCa -3'
miRNA:   3'- -UCUUAGuUCCCGgCU-----AgCGGG---------AGAGG- -5'
9378 3' -55.1 NC_002512.2 + 204666 0.67 0.959243
Target:  5'- gGGGAUCGccGGCgGcUCGCUCccgCUCCg -3'
miRNA:   3'- -UCUUAGUucCCGgCuAGCGGGa--GAGG- -5'
9378 3' -55.1 NC_002512.2 + 204019 0.69 0.906847
Target:  5'- cGGcuUCGugcGGGCCGAcggcgaacucUCGCCCUaCUUCg -3'
miRNA:   3'- -UCuuAGUu--CCCGGCU----------AGCGGGA-GAGG- -5'
9378 3' -55.1 NC_002512.2 + 199600 0.66 0.962011
Target:  5'- cGAcgCGGGGGCCuccuccauggCGCCggCUCCg -3'
miRNA:   3'- uCUuaGUUCCCGGcua-------GCGGgaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 197833 0.69 0.900729
Target:  5'- cGGAggugcAUCGAGGGgCGGcgggagGCCCUCUUCa -3'
miRNA:   3'- -UCU-----UAGUUCCCgGCUag----CGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 188925 0.71 0.828027
Target:  5'- gAGAGUCccgguggcGGGGCgcggCGGUCGguuCCCUCUCCc -3'
miRNA:   3'- -UCUUAGu-------UCCCG----GCUAGC---GGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 186524 0.7 0.833742
Target:  5'- cAGcGUCGaccucugcgugcacGGGGCCGA--GCCCUUUCCc -3'
miRNA:   3'- -UCuUAGU--------------UCCCGGCUagCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 184407 0.67 0.947644
Target:  5'- ----cCGGGGGgCGcUCgGCCUUCUCCg -3'
miRNA:   3'- ucuuaGUUCCCgGCuAG-CGGGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.