Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9378 | 3' | -55.1 | NC_002512.2 | + | 228671 | 0.68 | 0.929063 |
Target: 5'- gGGAGgacGGGGCCGGggcCGCcuuCCUCUCUu -3' miRNA: 3'- -UCUUaguUCCCGGCUa--GCG---GGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 225421 | 0.69 | 0.900729 |
Target: 5'- cGGggUCGgguuGGGGCCGA-CGCCgaCcCCc -3' miRNA: 3'- -UCuuAGU----UCCCGGCUaGCGGgaGaGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 223021 | 0.66 | 0.976871 |
Target: 5'- aGGGAc---GGGUCG-UCGCCCaCUCCg -3' miRNA: 3'- -UCUUaguuCCCGGCuAGCGGGaGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 219885 | 0.66 | 0.965912 |
Target: 5'- cGGggUCgGAGacgaGCCGAcCGCCCUcCUCUc -3' miRNA: 3'- -UCuuAG-UUCc---CGGCUaGCGGGA-GAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 218385 | 0.74 | 0.66026 |
Target: 5'- cGGG-CcAGGGCCucGUCGUCCUCUCCg -3' miRNA: 3'- uCUUaGuUCCCGGc-UAGCGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 216429 | 0.72 | 0.76673 |
Target: 5'- gGGAcgCcAGGcucGCCGc-CGCCCUCUCCa -3' miRNA: 3'- -UCUuaGuUCC---CGGCuaGCGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 216058 | 0.69 | 0.89439 |
Target: 5'- gGGcGUUcGGGGCCgGGUC-CUCUCUCCu -3' miRNA: 3'- -UCuUAGuUCCCGG-CUAGcGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 214773 | 0.71 | 0.79385 |
Target: 5'- -cAGUCcGGcGCCGGUCGCCCUCcgggUCCc -3' miRNA: 3'- ucUUAGuUCcCGGCUAGCGGGAG----AGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 214636 | 0.67 | 0.951729 |
Target: 5'- gGGGA-CGcGGGCCGccUCGCaguCUCUCCu -3' miRNA: 3'- -UCUUaGUuCCCGGCu-AGCGg--GAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 212933 | 0.66 | 0.968647 |
Target: 5'- -cGAUCGGGcGGCCcgguccgaGUCGCCCUacggcgcCUCCg -3' miRNA: 3'- ucUUAGUUC-CCGGc-------UAGCGGGA-------GAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 211974 | 0.67 | 0.947644 |
Target: 5'- --cGUCAGGacgcGGCCG-UCGUCCUCggggCCg -3' miRNA: 3'- ucuUAGUUC----CCGGCuAGCGGGAGa---GG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 209901 | 0.68 | 0.938806 |
Target: 5'- gGGAG-CAGGGGCUcAUCGUCgUCUgCa -3' miRNA: 3'- -UCUUaGUUCCCGGcUAGCGGgAGAgG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 208023 | 0.67 | 0.959243 |
Target: 5'- uAGAGUC-GGGGCgGAgacccUgGCCCgggugguuuUCUCCa -3' miRNA: 3'- -UCUUAGuUCCCGgCU-----AgCGGG---------AGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 204666 | 0.67 | 0.959243 |
Target: 5'- gGGGAUCGccGGCgGcUCGCUCccgCUCCg -3' miRNA: 3'- -UCUUAGUucCCGgCuAGCGGGa--GAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 204019 | 0.69 | 0.906847 |
Target: 5'- cGGcuUCGugcGGGCCGAcggcgaacucUCGCCCUaCUUCg -3' miRNA: 3'- -UCuuAGUu--CCCGGCU----------AGCGGGA-GAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 199600 | 0.66 | 0.962011 |
Target: 5'- cGAcgCGGGGGCCuccuccauggCGCCggCUCCg -3' miRNA: 3'- uCUuaGUUCCCGGcua-------GCGGgaGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 197833 | 0.69 | 0.900729 |
Target: 5'- cGGAggugcAUCGAGGGgCGGcgggagGCCCUCUUCa -3' miRNA: 3'- -UCU-----UAGUUCCCgGCUag----CGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 188925 | 0.71 | 0.828027 |
Target: 5'- gAGAGUCccgguggcGGGGCgcggCGGUCGguuCCCUCUCCc -3' miRNA: 3'- -UCUUAGu-------UCCCG----GCUAGC---GGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 186524 | 0.7 | 0.833742 |
Target: 5'- cAGcGUCGaccucugcgugcacGGGGCCGA--GCCCUUUCCc -3' miRNA: 3'- -UCuUAGU--------------UCCCGGCUagCGGGAGAGG- -5' |
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9378 | 3' | -55.1 | NC_002512.2 | + | 184407 | 0.67 | 0.947644 |
Target: 5'- ----cCGGGGGgCGcUCgGCCUUCUCCg -3' miRNA: 3'- ucuuaGUUCCCgGCuAG-CGGGAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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