miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9378 3' -55.1 NC_002512.2 + 165726 0.66 0.976871
Target:  5'- gGGggUCGGGGGCgcAUCGCuucaCCUUcgCCg -3'
miRNA:   3'- -UCuuAGUUCCCGgcUAGCG----GGAGa-GG- -5'
9378 3' -55.1 NC_002512.2 + 171738 0.74 0.680134
Target:  5'- gGGAcGUCGagcucGGGGCCc-UCGCCCUCUCg -3'
miRNA:   3'- -UCU-UAGU-----UCCCGGcuAGCGGGAGAGg -5'
9378 3' -55.1 NC_002512.2 + 172486 0.66 0.968941
Target:  5'- ---uUCAGGGGCucaaCGAccugcaucaguUCGUCUUCUCCc -3'
miRNA:   3'- ucuuAGUUCCCG----GCU-----------AGCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 174324 0.72 0.73763
Target:  5'- uGggUCAgcaggcgGGGGuCCGccgCGCCCUCgUCCg -3'
miRNA:   3'- uCuuAGU-------UCCC-GGCua-GCGGGAG-AGG- -5'
9378 3' -55.1 NC_002512.2 + 176017 0.66 0.962682
Target:  5'- -uGGUCccuGGGGaacggaCGGUCcCCCUCUCCu -3'
miRNA:   3'- ucUUAGu--UCCCg-----GCUAGcGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 177554 0.68 0.910997
Target:  5'- cAGGAUCGucugguucGGGGCCG-UCGCCaggaugcgcgccagCgUCUCCg -3'
miRNA:   3'- -UCUUAGU--------UCCCGGCuAGCGG--------------G-AGAGG- -5'
9378 3' -55.1 NC_002512.2 + 179810 0.73 0.719363
Target:  5'- cGggUCGAacagguaGGUCGGUC-CCCUCUCCg -3'
miRNA:   3'- uCuuAGUUc------CCGGCUAGcGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 184407 0.67 0.947644
Target:  5'- ----cCGGGGGgCGcUCgGCCUUCUCCg -3'
miRNA:   3'- ucuuaGUUCCCgGCuAG-CGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 186524 0.7 0.833742
Target:  5'- cAGcGUCGaccucugcgugcacGGGGCCGA--GCCCUUUCCc -3'
miRNA:   3'- -UCuUAGU--------------UCCCGGCUagCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 188925 0.71 0.828027
Target:  5'- gAGAGUCccgguggcGGGGCgcggCGGUCGguuCCCUCUCCc -3'
miRNA:   3'- -UCUUAGu-------UCCCG----GCUAGC---GGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 197833 0.69 0.900729
Target:  5'- cGGAggugcAUCGAGGGgCGGcgggagGCCCUCUUCa -3'
miRNA:   3'- -UCU-----UAGUUCCCgGCUag----CGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 199600 0.66 0.962011
Target:  5'- cGAcgCGGGGGCCuccuccauggCGCCggCUCCg -3'
miRNA:   3'- uCUuaGUUCCCGGcua-------GCGGgaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 204019 0.69 0.906847
Target:  5'- cGGcuUCGugcGGGCCGAcggcgaacucUCGCCCUaCUUCg -3'
miRNA:   3'- -UCuuAGUu--CCCGGCU----------AGCGGGA-GAGG- -5'
9378 3' -55.1 NC_002512.2 + 204666 0.67 0.959243
Target:  5'- gGGGAUCGccGGCgGcUCGCUCccgCUCCg -3'
miRNA:   3'- -UCUUAGUucCCGgCuAGCGGGa--GAGG- -5'
9378 3' -55.1 NC_002512.2 + 208023 0.67 0.959243
Target:  5'- uAGAGUC-GGGGCgGAgacccUgGCCCgggugguuuUCUCCa -3'
miRNA:   3'- -UCUUAGuUCCCGgCU-----AgCGGG---------AGAGG- -5'
9378 3' -55.1 NC_002512.2 + 209901 0.68 0.938806
Target:  5'- gGGAG-CAGGGGCUcAUCGUCgUCUgCa -3'
miRNA:   3'- -UCUUaGUUCCCGGcUAGCGGgAGAgG- -5'
9378 3' -55.1 NC_002512.2 + 211974 0.67 0.947644
Target:  5'- --cGUCAGGacgcGGCCG-UCGUCCUCggggCCg -3'
miRNA:   3'- ucuUAGUUC----CCGGCuAGCGGGAGa---GG- -5'
9378 3' -55.1 NC_002512.2 + 212933 0.66 0.968647
Target:  5'- -cGAUCGGGcGGCCcgguccgaGUCGCCCUacggcgcCUCCg -3'
miRNA:   3'- ucUUAGUUC-CCGGc-------UAGCGGGA-------GAGG- -5'
9378 3' -55.1 NC_002512.2 + 214636 0.67 0.951729
Target:  5'- gGGGA-CGcGGGCCGccUCGCaguCUCUCCu -3'
miRNA:   3'- -UCUUaGUuCCCGGCu-AGCGg--GAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 214773 0.71 0.79385
Target:  5'- -cAGUCcGGcGCCGGUCGCCCUCcgggUCCc -3'
miRNA:   3'- ucUUAGuUCcCGGCUAGCGGGAG----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.