miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9378 3' -55.1 NC_002512.2 + 79234 0.68 0.92385
Target:  5'- gAGAA-CGAGaGGCCGucggccgcCGgCCUCUCCc -3'
miRNA:   3'- -UCUUaGUUC-CCGGCua------GCgGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 117885 0.68 0.92385
Target:  5'- cGGAcgcCGGGGGCCcGUCGCUg-CUCCa -3'
miRNA:   3'- -UCUua-GUUCCCGGcUAGCGGgaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 209901 0.68 0.938806
Target:  5'- gGGAG-CAGGGGCUcAUCGUCgUCUgCa -3'
miRNA:   3'- -UCUUaGUUCCCGGcUAGCGGgAGAgG- -5'
9378 3' -55.1 NC_002512.2 + 111722 0.68 0.938806
Target:  5'- cGGAGUCuccggcGGGCaCGGUCGCCaugucgcggUUCCg -3'
miRNA:   3'- -UCUUAGuu----CCCG-GCUAGCGGga-------GAGG- -5'
9378 3' -55.1 NC_002512.2 + 228671 0.68 0.929063
Target:  5'- gGGAGgacGGGGCCGGggcCGCcuuCCUCUCUu -3'
miRNA:   3'- -UCUUaguUCCCGGCUa--GCG---GGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 204019 0.69 0.906847
Target:  5'- cGGcuUCGugcGGGCCGAcggcgaacucUCGCCCUaCUUCg -3'
miRNA:   3'- -UCuuAGUu--CCCGGCU----------AGCGGGA-GAGG- -5'
9378 3' -55.1 NC_002512.2 + 225421 0.69 0.900729
Target:  5'- cGGggUCGgguuGGGGCCGA-CGCCgaCcCCc -3'
miRNA:   3'- -UCuuAGU----UCCCGGCUaGCGGgaGaGG- -5'
9378 3' -55.1 NC_002512.2 + 197833 0.69 0.900729
Target:  5'- cGGAggugcAUCGAGGGgCGGcgggagGCCCUCUUCa -3'
miRNA:   3'- -UCU-----UAGUUCCCgGCUag----CGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 108435 0.69 0.900729
Target:  5'- cGGGGcCGGGGGCCGGgggGUCC-CUCCc -3'
miRNA:   3'- -UCUUaGUUCCCGGCUag-CGGGaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 216058 0.69 0.89439
Target:  5'- gGGcGUUcGGGGCCgGGUC-CUCUCUCCu -3'
miRNA:   3'- -UCuUAGuUCCCGG-CUAGcGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 135033 0.69 0.887832
Target:  5'- cAGGAUCGGGGGCCcGUCugacgcguacaGCCC-CUgCCu -3'
miRNA:   3'- -UCUUAGUUCCCGGcUAG-----------CGGGaGA-GG- -5'
9378 3' -55.1 NC_002512.2 + 96342 0.69 0.881058
Target:  5'- uGGAAgagCAcgcGGGGCgugaggCGAUCGUCCUCcCCg -3'
miRNA:   3'- -UCUUa--GU---UCCCG------GCUAGCGGGAGaGG- -5'
9378 3' -55.1 NC_002512.2 + 55061 0.69 0.881058
Target:  5'- gAGAGUCAucuGGGCgCGAccgcUCGCCCgaUUUCg -3'
miRNA:   3'- -UCUUAGUu--CCCG-GCU----AGCGGG--AGAGg -5'
9378 3' -55.1 NC_002512.2 + 118571 0.7 0.851904
Target:  5'- gGGAgcGUCGaaAGGGagccgCGAUCggcgGCCCUCUCCc -3'
miRNA:   3'- -UCU--UAGU--UCCCg----GCUAG----CGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 186524 0.7 0.833742
Target:  5'- cAGcGUCGaccucugcgugcacGGGGCCGA--GCCCUUUCCc -3'
miRNA:   3'- -UCuUAGU--------------UCCCGGCUagCGGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 127644 0.7 0.866883
Target:  5'- aGGGAUCGGGucgcucggacGGCCGGUCGagggCCgCUCCg -3'
miRNA:   3'- -UCUUAGUUC----------CCGGCUAGCg---GGaGAGG- -5'
9378 3' -55.1 NC_002512.2 + 188925 0.71 0.828027
Target:  5'- gAGAGUCccgguggcGGGGCgcggCGGUCGguuCCCUCUCCc -3'
miRNA:   3'- -UCUUAGu-------UCCCG----GCUAGC---GGGAGAGG- -5'
9378 3' -55.1 NC_002512.2 + 164262 0.71 0.811248
Target:  5'- gGGGGcCGucGGGUCGAUCGCCUcgggcuucgUCUCCu -3'
miRNA:   3'- -UCUUaGUu-CCCGGCUAGCGGG---------AGAGG- -5'
9378 3' -55.1 NC_002512.2 + 214773 0.71 0.79385
Target:  5'- -cAGUCcGGcGCCGGUCGCCCUCcgggUCCc -3'
miRNA:   3'- ucUUAGuUCcCGGCUAGCGGGAG----AGG- -5'
9378 3' -55.1 NC_002512.2 + 216429 0.72 0.76673
Target:  5'- gGGAcgCcAGGcucGCCGc-CGCCCUCUCCa -3'
miRNA:   3'- -UCUuaGuUCC---CGGCuaGCGGGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.